View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20171_high_12 (Length: 314)
Name: NF20171_high_12
Description: NF20171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20171_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 21 - 307
Target Start/End: Complemental strand, 26690318 - 26690032
Alignment:
| Q |
21 |
gcagtctctttatagccacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgc |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26690318 |
gcagtctctttatagccacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgc |
26690219 |
T |
|
| Q |
121 |
aagttttagttccgagtaagtgaattttcgaaatcttgctcctgcaagaatgtagccttgattatctctaacaaagtgcttcttattcttaaataagaac |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26690218 |
aagttttagttccgagtaagtgaattttcgaaatcttgctcctgcaagaacgtagccttgattatctctaacaaagtgcttcttattcttaaataagaac |
26690119 |
T |
|
| Q |
221 |
caccatatcataaagaagcaaaaggcctcaattacccctaagccagaagtaaaccaaagcatgaacttcattggtccatattcttcg |
307 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26690118 |
caccatatcataaagaagcacaaggcctcaattacccctaagccagaagtaaaccaaagcatgaacttcattggtccattttcttcg |
26690032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 25 - 305
Target Start/End: Complemental strand, 26694475 - 26694192
Alignment:
| Q |
25 |
tctctttatagccacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagt |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
26694475 |
tctctttatagccacaactctattatcagataataaacccttatacacagttcctccagcaccctttccaatctcttgactaaaacattttgttgcttgt |
26694376 |
T |
|
| Q |
125 |
tttagttccgagtaagtgaattttcgaaatc---ttgctcctgcaagaatgtagccttgattatctctaacaaagtgcttcttattcttaaataagaacc |
221 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
26694375 |
tttagttccgagtaagtgaatttttgaaatcctgtagctcctgcaagaacgtagccttgattatctataacaaagtgctcgctattcttaaataagaaga |
26694276 |
T |
|
| Q |
222 |
accatatcataaagaagcaaaaggcctcaattacccctaagccagaagtaaaccaaagcatgaacttcattggtccatattctt |
305 |
Q |
| |
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||||||||||||| || || | ||||||||||||||||||||||| | ||||||||| || | ||||| || ||||| ||||| |
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| T |
26694275 |
accatatcataaaaaaacatagcgcctcaattacccctaagccagacgcaaaccaaaggataatcttcactgatccattttctt |
26694192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 26731629 - 26731447
Alignment:
| Q |
21 |
gcagtctctttatagccacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26731629 |
gcagtctctttatagccacaactctattatcagataataaacccttatacacagttcctccagcaccacttccaatctcttgactaaaacattttgttgc |
26731530 |
T |
|
| Q |
121 |
aagttttagttccgagtaagtgaattttcgaaatcttgctcctgcaagaatgtagccttgattatctctaacaaagtgcttct |
203 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
26731529 |
aagttttagttccgaataagtgaattttcgaaatcttgctcctgcaagaacgtagccttgattatctctaagaaagtgcttct |
26731447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 281
Target Start/End: Original strand, 26675771 - 26676026
Alignment:
| Q |
29 |
tttatagccacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagtttta |
128 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||| | |
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|
| T |
26675771 |
tttatagccacaaccctattatcagataataaacctttatatacagttcctccagcaccctttccaatctcttgactgaaaccttttgttgcttgtttca |
26675870 |
T |
|
| Q |
129 |
gttccgagtaagtgaattttcgaaatc---ttgctcctgcaagaatgtagccttgattatctctaacaaagtgcttcttattcttaaataagaaccacca |
225 |
Q |
| |
|
||| |||||| |||||| ||||||| ||| |||||||||||||||||| |||| | || | |||||||| |||||||||||||||| |||| |
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| T |
26675871 |
attcagagtaactgaattcccgaaatccaggggctattgcaagaatgtagccttgtttatttgtagcggagtgcttcctattcttaaataagaagcaccc |
26675970 |
T |
|
| Q |
226 |
tatcataaagaagcaaaaggcctcaattacccctaagccagaagtaaaccaaagca |
281 |
Q |
| |
|
||||||||||| || |||||||||| || |||| || | ||||||||||| |
|
|
| T |
26675971 |
cgcaataaagaagcacaatacctcaattactcccaagcaagtcgcaaaccaaagca |
26676026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 26744398 - 26744506
Alignment:
| Q |
39 |
caactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccgagta |
138 |
Q |
| |
|
|||||| |||||||||||| | |||| ||||||||||||| | |||||| ||||||||||||||||| ||| ||||||||| |||||||||| ||||| |
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| T |
26744398 |
caactcgattatcagataaaacacccttatacacagttccacaagcaccctttccaatctcttgactgaaattctttgttgcatgttttagttcagagta |
26744497 |
T |
|
| Q |
139 |
agtgaattt |
147 |
Q |
| |
|
|||||||| |
|
|
| T |
26744498 |
ggtgaattt |
26744506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 26751323 - 26751431
Alignment:
| Q |
39 |
caactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccgagta |
138 |
Q |
| |
|
|||||| ||| |||||||| | |||| |||||||||||||||||||||| |||| |||||||||||||||| |||||| || |||| | ||| ||||| |
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| T |
26751323 |
caactcgattgtcagataaaacacccttatacacagttcctccagcacctcttccgatctcttgactaaaaccttttgtagcttgtttcaattcagagta |
26751422 |
T |
|
| Q |
139 |
agtgaattt |
147 |
Q |
| |
|
| ||||||| |
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|
| T |
26751423 |
actgaattt |
26751431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 26714134 - 26714223
Alignment:
| Q |
28 |
ctttatagccacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgt |
117 |
Q |
| |
|
|||||| || ||||||| || ||||||||| | ||| ||||||| ||||||||||| || ||||||||||||| ||||||| |||||| |
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|
| T |
26714134 |
ctttatcgcaacaactcgatcatcagataaaatacctttatacacggttcctccagctcctcttccaatctcttggctaaaaccttttgt |
26714223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 26737370 - 26737459
Alignment:
| Q |
28 |
ctttatagccacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgt |
117 |
Q |
| |
|
|||||| || ||||||| || ||||||||| | ||| ||||||| ||||||||||| || ||||||||||||| ||||||| |||||| |
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| T |
26737370 |
ctttatcgcaacaactcgatcatcagataaaatacctttatacacggttcctccagctcctcttccaatctcttggctaaaaccttttgt |
26737459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 290
Target Start/End: Original strand, 26744562 - 26744655
Alignment:
| Q |
197 |
tgcttcttattcttaaataagaaccaccatatcataaagaagcaaaaggcctcaattacccctaagccagaagtaaaccaaagcatgaacttca |
290 |
Q |
| |
|
|||||| | ||||| |||||||| ||||||| |||||||||||| ||| ||||||| | || |||||| | |||||||||||||||||||| |
|
|
| T |
26744562 |
tgcttcctgttctttaataagaaacaccataccataaagaagcagaagaactcaattcctcccaagccacttgcaaaccaaagcatgaacttca |
26744655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 26698993 - 26699101
Alignment:
| Q |
39 |
caactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccgagta |
138 |
Q |
| |
|
|||||| |||||||||||| | ||| |||| |||||||||||||| || |||| ||||||| ||||||| |||||| || | |||| ||| ||||| |
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|
| T |
26698993 |
caactcgattatcagataaaacacctttatatacagttcctccagctccccttccgatctcttcgctaaaaccttttgtagcttgatttatttcagagta |
26699092 |
T |
|
| Q |
139 |
agtgaattt |
147 |
Q |
| |
|
| ||||||| |
|
|
| T |
26699093 |
actgaattt |
26699101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 26734156 - 26734264
Alignment:
| Q |
39 |
caactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccgagta |
138 |
Q |
| |
|
|||||| |||||||||||| | ||| |||| |||||||||||||| || |||| ||||||| ||||||| |||||| || | |||| ||| ||||| |
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| T |
26734156 |
caactcgattatcagataaaacacctttatatacagttcctccagctccccttccgatctcttcgctaaaaccttttgtagcttgatttatttcagagta |
26734255 |
T |
|
| Q |
139 |
agtgaattt |
147 |
Q |
| |
|
| ||||||| |
|
|
| T |
26734256 |
actgaattt |
26734264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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