View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20171_high_14 (Length: 261)
Name: NF20171_high_14
Description: NF20171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20171_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 6 - 184
Target Start/End: Original strand, 531074 - 531252
Alignment:
| Q |
6 |
agcagcagagaagaagaaggtgcatatccattttttaatttgaaaatacaaagaagcttgatataattggttttggcaaatggacatgcggctaacgatc |
105 |
Q |
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| T |
531074 |
agcaacagaaaagaagaaggtgcatatccattttttaattgaaaaatacaaagaagcttgatataattggttttggcaaatggacatgcggctaacgatc |
531173 |
T |
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| Q |
106 |
ctaaaaccaaggaagcttggaatgtgcatataaagaggaaaatgatgatcgataatgggtatgaagaaaattgatgaag |
184 |
Q |
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| T |
531174 |
ctaaaatcaaggaagcttggaatgtgcatataaagaggaaaatgatgatcgataatgggtatgaagaaaattgatgaag |
531252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 6 - 184
Target Start/End: Original strand, 564029 - 564207
Alignment:
| Q |
6 |
agcagcagagaagaagaaggtgcatatccattttttaatttgaaaatacaaagaagcttgatataattggttttggcaaatggacatgcggctaacgatc |
105 |
Q |
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| T |
564029 |
agcaacagaaaagaagaaggtgcatatccattttttaattgaaaaatacaaagaagcttgatataattggttttggcaaatggacatgcggctaacgatc |
564128 |
T |
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| Q |
106 |
ctaaaaccaaggaagcttggaatgtgcatataaagaggaaaatgatgatcgataatgggtatgaagaaaattgatgaag |
184 |
Q |
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| T |
564129 |
ctaaaatcaaggaagcttggaatgtgcatataaagaggaaaatgatgatcgataatgggtatgaagaaaattgatgaag |
564207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 32848131 - 32848033
Alignment:
| Q |
83 |
aaatggacatgcggctaacgatcctaaaaccaaggaagcttggaatgtgcatataaagaggaaaatgatgatcgataatgggtatgaagaaaattgatga |
182 |
Q |
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| T |
32848131 |
aaatgaacatgtggctcatgatcctaaaatcaaggaagtttggattgtgcataaatagag--aaatgatgatcaataatgggtatcaagaaaattgatga |
32848034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 34272289 - 34272402
Alignment:
| Q |
68 |
ataattggttttggcaaatggacatgcggctaacgatcctaaaaccaaggaagcttggaatgtgcatataaagaggaaaatgatgatcgataatgggtat |
167 |
Q |
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| T |
34272289 |
ataattggtttaggtaaatggacatgtgactagtgatcctaaaatcaaggatgcttagattgtgc--ataaatagaaaaatgataaataataatgggtat |
34272386 |
T |
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| Q |
168 |
gaagaaaattgatgaa |
183 |
Q |
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| T |
34272387 |
gaagaaaattgatgaa |
34272402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 49138139 - 49138212
Alignment:
| Q |
103 |
atcctaaaaccaaggaagcttggaatgtgcatataaagaggaaaatgatgatcgataatgggtatgaagaaaattga |
179 |
Q |
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| T |
49138139 |
atcctaaaataaaggaagcttggattgtacata--aataggaaaatgat-atcaataatgggtatgaagaaaattga |
49138212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 32471336 - 32471249
Alignment:
| Q |
66 |
atataattggttttggcaaatggacatgcggctaacgatcctaaaaccaaggaagcttggaatgtgcatataaagaggaaaatgatgatc |
155 |
Q |
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| T |
32471336 |
atattattggttgaggcaaatggacatgtagttagtgatcctaaaatcaaggaagcttggattgtgcataaatagag--aaatgatgatc |
32471249 |
T |
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