View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20171_high_3 (Length: 422)
Name: NF20171_high_3
Description: NF20171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20171_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 35256746 - 35256337
Alignment:
| Q |
1 |
aattcatcacccattgtcccttatatgtctcaccattaatacccgtgtatgttcctacaccatccatgaaaccagtcttgaattcgccttcatatgtagc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35256746 |
aattcatcacccattgtcctttatatgtctcaccattaatacccgtgtatgttcctacaccatccatgaaaccagtcttgaattcgccttcatatgtagc |
35256647 |
T |
|
| Q |
101 |
gcctgaaggccaactgaatctaccttttccctttgtttttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttctcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35256646 |
gcctgaaggccaactgaatctaccttttccctttgtttttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttctcca |
35256547 |
T |
|
| Q |
201 |
tgtggaaaattttctgcccattgtcctgtatagtaatcaccattggaaagaaccttctcttcggtgtatagttcaaatacctggtttccattttcatcgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35256546 |
tgtggaaaattttctgcccattgtcctgtatagtaatcaccattggaaagaaccttctcttcggtgtatagttcaaatacctggtttccattttcatcgt |
35256447 |
T |
|
| Q |
301 |
tatcatcatgatggtggctgccttcttcatcgtctgcatttgtaattgctaatgctccaagaccaaatatactattggcacgttttttagctactgcact |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35256446 |
tatcatcatggtggtggctgccttcttcatcgtctgcatttgtaattgctaatgctccaagaccaaatatactattggcacgttttttagctactgcact |
35256347 |
T |
|
| Q |
401 |
tgttcttctc |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
35256346 |
tgttcttctc |
35256337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 19642990 - 19643249
Alignment:
| Q |
1 |
aattcatcacccattgtcccttatatgtctcaccattaatacccgtgtatgttcctacaccatccatgaaaccagtcttgaattcgccttcatatgtagc |
100 |
Q |
| |
|
||||||||||||||||||| ||||| || || |||||| || ||||||| |||| |||||||| ||||| ||||||| || |||||||| | | |
|
|
| T |
19642990 |
aattcatcacccattgtcctttataagtatccccattagtagaagtgtatgcacctattccatccatataaccactcttgaactccccttcataagctgg |
19643089 |
T |
|
| Q |
101 |
gcctgaaggccaactgaatctaccttttccctttgtttttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttctcca |
200 |
Q |
| |
|
|||||||||||| |||| || || |||||| | ||||||||||||||||||| |||||| || || || ||||| ||||||| || || |||| ||| |
|
|
| T |
19643090 |
ccctgaaggccaagtgaaccttccctttcccatagtttttcctttgaaccattctccaacatatatacatccatctgtccataagtacttccctttccca |
19643189 |
T |
|
| Q |
201 |
tgtggaaaattttctgcccattgtcctgtatagtaatcaccattggaaagaaccttctct |
260 |
Q |
| |
|
||||| || || || ||||||| |||| |||||||||| ||||||| |||||| ||||| |
|
|
| T |
19643190 |
tgtgggaagttatcagcccattctcctttatagtaatctccattgggtagaaccctctct |
19643249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University