View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20171_low_1 (Length: 618)

Name: NF20171_low_1
Description: NF20171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20171_low_1
NF20171_low_1
[»] chr3 (1 HSPs)
chr3 (1-605)||(43418049-43418674)


Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Original strand, 43418049 - 43418674
Alignment:
Q  1 acaaatttgattacacaaccaaacataaatcaaaggttaggtcatgacttaacacgacctaacataaatcag--------ggacacttgttacaccagac 92  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  43418049 acaaatttgattacacgaccaaacataaatcaaaggttaggtcatgacttaacacgacctaacataaatcagagcaacagggacacttgttacaccagac 43418148  T
Q  93 gttaagaacacgcacaaacgtttatagattaggtctaagaggcttgagttatacatctcggtttataactcaggtcagaaacaaagtttcatgtctgagc 192  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43418149 gttaagaacacgcacaaacgtttatagcttaggtctaagaggcttgagttatacatctcggtttataactcaggtcagaaacaaagtttcatgtctgagc 43418248  T
Q  193 agaatttgttttttcnnnnnnnttacttaacttttagacccgttagatatgatttaactaaggggcttgtgtaacggttacacaaaattagaaacacaaa 292  Q
    |||||||||||||||       |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43418249 agaatttgttttttcaaaaaaattacttaactgttagacctgttagatatgatttaactaaggggcttgtgtaacggttacacaaaattagaaacacaaa 43418348  T
Q  293 aaacttcatcaatttgaaagctcttaaagtgtctaattgatcaggagaattagctgaagaagaggagaataacatatcttgtatatatgggtagtgaaag 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43418349 aaacttcatcaatttgaaagctcttaaagtgtctaattgatcaggagaattagctgaagaagaggagaataacatatcttgtatatatgggtagtgatag 43418448  T
Q  393 tattgaaagaatttttacgaagacatcgtgaataaaatatgttgtctctattgatatatgaatctta-------------tcattgcaagtgagggaaat 479  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||    
T  43418449 tattgaaagaatttttacgaagacatcatgaataaaatatgttgtctctattgatatatgaatcttatcatggggctggttcattgcaagtgagggaaat 43418548  T
Q  480 acaaattgagtactctttttggacgtatgattgtgtagtttacaaggtgtataagaagaagaacaaggaggagaacacgttcttttttgttcttcaatta 579  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43418549 acaaattgagtactctttttggacgtatgattgggtagtttacaaggtgtataagaagaagaacaaggaggagaacacgttcttttttgttcttcaatta 43418648  T
Q  580 taattaatttgcataaaccaaaactg 605  Q
    |||||| |||||||||||||||||||    
T  43418649 taattagtttgcataaaccaaaactg 43418674  T

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