View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20171_low_11 (Length: 317)
Name: NF20171_low_11
Description: NF20171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20171_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 219595 - 219297
Alignment:
| Q |
1 |
tgacaaactaaattccaataatactatatatagctaaaagttaaaacttgaaagtaacaatgaattaatattttaaaatgcaaaccttgtagacatatgg |
100 |
Q |
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| T |
219595 |
tgacaaactaaattccaataatactatatatagctaaaagttaaaacttgaaagtaacaatgaattaatattttaaaatgcaaaccttgtagacatatgg |
219496 |
T |
|
| Q |
101 |
gcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataagca |
200 |
Q |
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| T |
219495 |
gcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataagca |
219396 |
T |
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| Q |
201 |
taagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatgatagctatta |
299 |
Q |
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| T |
219395 |
taagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatgatagctatta |
219297 |
T |
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Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 99 - 299
Target Start/End: Original strand, 31651709 - 31651909
Alignment:
| Q |
99 |
gggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataag |
198 |
Q |
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|||||||| || |||||||| |||||||||| || ||| ||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
31651709 |
gggcatcccggataatcaaattcatctgaatcagctttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataag |
31651808 |
T |
|
| Q |
199 |
cataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatgatagctatt |
298 |
Q |
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| T |
31651809 |
catcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatgatagctatt |
31651908 |
T |
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| Q |
299 |
a |
299 |
Q |
| |
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| |
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| T |
31651909 |
a |
31651909 |
T |
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