View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20171_low_13 (Length: 294)
Name: NF20171_low_13
Description: NF20171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20171_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 278
Target Start/End: Original strand, 31929946 - 31930216
Alignment:
| Q |
10 |
agaagaaaacgactggaagtaaagaatgaaggtacgtagcagccaagagaaaattcatgaagagtgtactagtgtgtattaattataagaaggaaaaaag |
109 |
Q |
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| T |
31929946 |
agaagaaaacgactggaagtaaagcatgaaggtacgtagcagccaagagaaaattcatgaagagtgtaccagtgtgtattaattaaaagaaggaaaaaag |
31930045 |
T |
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| Q |
110 |
acactagagtctcatatattggataatggagtattaatgtgtgtgaattgacaaaacactaaagtggagtttacatacattggatatctttcactttcaa |
209 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31930046 |
acactagagtctgatatattggataatggagtattaatgtgtgtgaattgacaaaacactaaagtggagtttacatacattggatatctttcactttcaa |
31930145 |
T |
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| Q |
210 |
tactatacaaagagtgttaaaccttttgtgt--agttcatcaaagtttgacacattttttagctttgtttt |
278 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31930146 |
tactatacaaagagtgttaaaccttttgtgtaaagttcatcaaagtttgacacattttttagctttgtttt |
31930216 |
T |
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