View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20171_low_16 (Length: 230)
Name: NF20171_low_16
Description: NF20171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20171_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 26309419 - 26309615
Alignment:
| Q |
15 |
catagggttgataattaaattgacctgttcatgatgtcgagatcctcctttgtattgtgtggatgatggctttgaggtaattctattgcaattggatctc |
114 |
Q |
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| T |
26309419 |
catagggttgataattaaattgacctgttcatgatgtcgagatcctcctttgtatcgtgtggatg---gctttgaggtaattctattgcaattggatctc |
26309515 |
T |
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| Q |
115 |
taacaaacaagttttgtcttatcccttttgtccttcccacccaacatcatagtgcaattttcatcagaaaaagagggagttataaactagtagttgaagt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26309516 |
taacaaacaagttttgtcttatcccttttgtccttctcacccaacatcatagtgcaatattcatcagaaaaagagggagttataaactagtagttgaagt |
26309615 |
T |
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