View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20171_low_2 (Length: 544)
Name: NF20171_low_2
Description: NF20171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20171_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 15 - 537
Target Start/End: Original strand, 3447176 - 3447699
Alignment:
| Q |
15 |
aaaaacaatcaaaattcagctgttatattcattataaaacattttatattcatacaaatacaattgccaaacatttgtcctccatcttctattagtttac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3447176 |
aaaaacaatcaaaattcagctgttatattcattataaaacattttatattcatacaaatacaattgtcaaacatttgtcctccatcttctattagtttac |
3447275 |
T |
|
| Q |
115 |
tgtgaaacttatgtatgtattggaaagggtcaatagaacaacaattgtcaatcatcaagttcaatttacaaaattcacataaaggaacctatttgttctt |
214 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3447276 |
tgtgaaacttatgtatttattggaaagggtcaatagaacaacaattgtcaatcatcaagttcaatttacaaaattcacataaaggaacctttttgttctt |
3447375 |
T |
|
| Q |
215 |
tatttcacacacaaaaggaccaactcagcaattcaaagcaaccaaatccaagacaaggccaatattcagaaaaggccgacttaacaatcaaaacattcaa |
314 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3447376 |
tatttcacacataaaaggaccaactcagcaattcaaagcaaccaaatccaagacaaggccaatattcagaaaaggccgacttaacaatcaaaacattcaa |
3447475 |
T |
|
| Q |
315 |
atgcaggaacagtttaggacataaagtgcactcaaaacaatcaaaattcagttgttatatcaaagcatcaagctacctg-ttcggttgaaatcaattttg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3447476 |
atgcaggaacagtttaggacataaagtgcactcaaaacaatcaaaattcagttgttatatcaaagcatcaagctacctgtttcggttgaaatcaattttg |
3447575 |
T |
|
| Q |
414 |
aggatagcctatgtattagattttacattttagactcctcaaattgatttcaaccgaagtggattgtgtgatgcttttggataatccctgttttgtggct |
513 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
3447576 |
aggatagcctaagtattagattttacattttagactcgtcaaattgatctcaaccgaagtggattgtgtgatgcttttgaataatccatgttttgtggct |
3447675 |
T |
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| Q |
514 |
tagagacctctaaaatcacctttg |
537 |
Q |
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|||||||||||||||||||||||| |
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| T |
3447676 |
tagagacctctaaaatcacctttg |
3447699 |
T |
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