View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20171_low_5 (Length: 413)
Name: NF20171_low_5
Description: NF20171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20171_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 6 - 397
Target Start/End: Original strand, 43380236 - 43380616
Alignment:
| Q |
6 |
gtccaagaatataccacttgctaatgttcgcatttgctactcccccttttcaagaacagcccacactgctaatgttgttgcaacagcattgaatattcct |
105 |
Q |
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| T |
43380236 |
gtccaataatataccacttgctaatgttcgcatttgctactcccccttttcaagaacaacccacactgctaatgttgttgcaacagcattgaatattcct |
43380335 |
T |
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| Q |
106 |
tttcatgcctctcagtgtaaggtcatccaagatcttcgagagcgctactttggtccttcctttgagcttttatctcatgataaggtaactcattcataaa |
205 |
Q |
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| T |
43380336 |
tttcatgcctctcattgtaaggtcatccaagatcttcgagagcgctactttggtccttcctttgagcttttatctcatgataaggtaactcattcataaa |
43380435 |
T |
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| Q |
206 |
tggctcaatttgtgtcatgacttttaagacagagaatcagtttccaacaaatgaaaagtagtttgttaaactcattttctcttttcannnnnnnatcaac |
305 |
Q |
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| T |
43380436 |
tggctcaatttgtgtcatgagttttaagacagagaatcagttt-taagtcatg------agtttgttaaactcattttctcttttcatttttttatc--- |
43380525 |
T |
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| Q |
306 |
aaacagtatgatcatatttgggaaatagatgagaaagatcctctttttgggccagaaggaggggaaagtgttaaggatgttgccagtagact |
397 |
Q |
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| T |
43380526 |
-aatagtatgatcatatttgggaaatagatgagaaagatcctcttgttgggccagaaggaggggaaagtgttaaggatgttgccagtagact |
43380616 |
T |
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