View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20171_low_6 (Length: 403)
Name: NF20171_low_6
Description: NF20171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20171_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 564858 - 564506
Alignment:
| Q |
18 |
aggtacttcattcactatgcaatcagagacttaggaataattggcaaactccgtgatcaaatcttgtgtgttctttgtgtgcannnnnnnnnnnnnnnnn |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
564858 |
aggtacttcattcactatgcaatcagagacttaggaataattggcaaactccgtgatcaaatctcgtgtgttctttgtttgcatttttgtagttttattt |
564759 |
T |
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| Q |
118 |
nnnnnnnnaactagatctgttgttctaatagcattgttgaagaactaaactgatgatagaaatatttcatgtaacaaactgatagaaactaatttaatat |
217 |
Q |
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| T |
564758 |
ttctttttaactagatctgttgttctaatagcattggtgaagaactaaactgatgatagaaatatttcctgtaacaaactgatagaaactaatttaatat |
564659 |
T |
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| Q |
218 |
gtaagtctaagcttgaataattgaagaactatattgtgaaagcaagaaggtgagtcgttcttgatagagtctatagtgaaagcaagaagcagactcattc |
317 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
564658 |
gtaagtctaagcttgaataattgaagaactaaattgtgaaagcaagaaggtgagtcgttcttgatagagtctatagtgaaagcaagaagcagactcattc |
564559 |
T |
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| Q |
318 |
ttgacaaagctgctcctaaaactttgaagttttgtaaaagtaatcatttgata |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
564558 |
ttgacaaagctgctcctaaaactttgaagttttgtaaaagtaatcatttgata |
564506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 26 - 370
Target Start/End: Complemental strand, 532269 - 531925
Alignment:
| Q |
26 |
cattcactatgcaatcagagacttaggaataattggcaaactccgtgatcaaatcttgtgtgttctttgtgtgcannnnnnnnnnnnnnnnnnnnnnnnn |
125 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
532269 |
cattcactatgcactcagagacttaggaataattggcaaactccttgatcaaatcttgtgtgttctttgtttgcatttttgtagttttttttttcttttt |
532170 |
T |
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| Q |
126 |
aactagatctgttgttctaatagcattgttgaagaactaaactgatgatagaaatatttcatgtaacaaactgatagaaactaatttaatatgtaagtct |
225 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
532169 |
aactaggtctgttgttctaatagcattgttgaagaactaaactgatcatagaattatttcatgtaacaaactgatagaaactgatttaatatgtaagtct |
532070 |
T |
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| Q |
226 |
aagcttgaataattgaagaactatattgtgaaagcaagaaggtgagtcgttcttgatagagtctatagtgaaagcaagaagcagactcattcttgacaaa |
325 |
Q |
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||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
532069 |
aagattgaataattgaagaactaaattgtgaaagaaagaaggtgcgtcgttcttaatagagtctatagtgaaagcaagaagcagactcattcttgacaaa |
531970 |
T |
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| Q |
326 |
gctgctcctaaaactttgaagttttgtaaaagtaatcatttgata |
370 |
Q |
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| T |
531969 |
gctgctcctaaaacttcgaagttttgtaaaagtaatcatttgata |
531925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 403
Target Start/End: Complemental strand, 564402 - 564367
Alignment:
| Q |
368 |
atatcctaatcaataatccaattgtctgtaagagtt |
403 |
Q |
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| T |
564402 |
atatcctaatcaataatccaattgtctgtaagagtt |
564367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 22746716 - 22746674
Alignment:
| Q |
54 |
ataattgg-caaactccgtgatcaaatcttgtgtgttctttgt |
95 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
22746716 |
ataattggtcaaactccgtgatcaaatcttgtgtgttatttgt |
22746674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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