View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20171_low_7 (Length: 380)
Name: NF20171_low_7
Description: NF20171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20171_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 29936146 - 29935775
Alignment:
| Q |
13 |
caaaggaggtgaaaagtccacaaaagccttagtggcaacgttgactgaacatattcaaattccaactttgtggcaactaatcaacaaccacagatgcaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29936146 |
caaaggaggtgaaaagtccacaaaagccttagtggcaacgctgactgaacatattcaa-ttccaactttgtggcaactaatcaacaaccactgatgcaaa |
29936048 |
T |
|
| Q |
113 |
ttcaattcaataatttaacatctaaagtaacaaaaccacatgaaaccttcctcgacctttcttcttg--------------------caaatacaaagtt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
29936047 |
ttcaattcaataatttaacatctaaagtaacaaaaccacatgaaaccttccacgacctttcttcttggagttaccttgtccttgtggcaaatacaaagtt |
29935948 |
T |
|
| Q |
193 |
gaatacgaaaactatatgttaaattattaatacacactcctaaatttgttccttgtataaatataagtcttcaattcgttttcatcgaaatagtcataaa |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29935947 |
gaatacgaaaactatatgttaaattattaatacacactcctaaatttgttgcttgtataaatataagtcttcaattcgttttcatcgaaatagtcataaa |
29935848 |
T |
|
| Q |
293 |
acatttacattcaacatgagaaacattttattaaggtcaactgcacgagctttgttccgcaatggtgggaact |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29935847 |
acatttacattcaacatgagaaacattttattaaggtcaactgcacgagctttgttccgcaatggtgggaact |
29935775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University