View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20171_low_9 (Length: 324)
Name: NF20171_low_9
Description: NF20171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20171_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 160 - 308
Target Start/End: Original strand, 1047823 - 1047965
Alignment:
| Q |
160 |
aattttcgacggccatgacactcacaaatatagaaggaaaatacaattttgcaatatactagaagttcgaacctcgaatttctcacttattcacctacct |
259 |
Q |
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| T |
1047823 |
aatttccgacggccatgacactcacaaatatagaaggaaaatacaattttgcaatatactagaagttcgaacctcgaatttctcacttattcacctgcct |
1047922 |
T |
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| Q |
260 |
attagacgtagactgcttgacaaacaaaatatttattaccaaggaatta |
308 |
Q |
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| T |
1047923 |
at------tagactacttgacaaacaaaatatttattaccaaggaatta |
1047965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 1047690 - 1047828
Alignment:
| Q |
1 |
attcgaatggatgcttccacagtaggtaaatgctatattcttctcaaacatttatgcnnnnnnnatggattatataaatgacactagaagaggcatcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||| |||| |
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| T |
1047690 |
attcgaatggatgcttccacagtaggtaaatgctatgttcttctcaaacatttattctttttgtatggattatataaatgacacttgaagaggcaccata |
1047789 |
T |
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| Q |
101 |
g--ttaggcttctttttccgatggccaactttaaatttc |
137 |
Q |
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| T |
1047790 |
gtattagacttctttttccgatggccaacttgaaatttc |
1047828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 160 - 266
Target Start/End: Original strand, 1073624 - 1073730
Alignment:
| Q |
160 |
aattttcgacggccatgacactcacaaatatagaaggaaaatacaattttgcaatatactagaagttcgaacctcgaatttctcacttattcacctacct |
259 |
Q |
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| T |
1073624 |
aattttcgacagccatgacactcacaaatatagaaggaaaatacaattttgcaatatattagaagtttgaacctgaaattcctcacatatatatctacct |
1073723 |
T |
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| Q |
260 |
attagac |
266 |
Q |
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||||||| |
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| T |
1073724 |
attagac |
1073730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1072500 - 1072556
Alignment:
| Q |
1 |
attcgaatggatgcttccacagtaggtaaatgctatattcttctcaaacatttatgc |
57 |
Q |
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| T |
1072500 |
attcgaatggatgcttccacagtaggtaaatgctatattcttctcaaacatttatgc |
1072556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1088164 - 1088220
Alignment:
| Q |
1 |
attcgaatggatgcttccacagtaggtaaatgctatattcttctcaaacatttatgc |
57 |
Q |
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| T |
1088164 |
attcgaatggatgcttccacagtaggtaaatgctatgttcttctcacacatttatgc |
1088220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 308
Target Start/End: Original strand, 1088567 - 1088676
Alignment:
| Q |
193 |
aaggaaaatacaattttgcaatatactagaagttcgaacctcgaatttctcacttattcacctacctattagacgtagactgcttgacaaacaaaatatt |
292 |
Q |
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|||| ||||||| |||||||||| || |||||||||||||| |||| |||| ||||| | |||||||| |||||| ||||||||||||||||| |
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| T |
1088567 |
aagggaaatacatctttgcaatattctggaagttcgaacctcaaattcctcatttatttatctacctat------tagactacttgacaaacaaaatata |
1088660 |
T |
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| Q |
293 |
tattaccaaggaatta |
308 |
Q |
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| T |
1088661 |
tattaccaagaaatta |
1088676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 1073569 - 1073621
Alignment:
| Q |
76 |
aaatgacactagaagaggcatcatagttaggcttctttttccgatggccaact |
128 |
Q |
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| T |
1073569 |
aaatgacactagaagaggcaccatagttagatttcttttcccgatggccaact |
1073621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 1104718 - 1104748
Alignment:
| Q |
2 |
ttcgaatggatgcttccacagtaggtaaatg |
32 |
Q |
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| T |
1104718 |
ttcgaatggatgcttccacagtaggtaaatg |
1104748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 3218638 - 3218670
Alignment:
| Q |
224 |
gttcgaacctcgaatttctcacttattcaccta |
256 |
Q |
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| T |
3218638 |
gttcgaacctcgaacttctcacttattcaccta |
3218670 |
T |
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