View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20172_high_1 (Length: 567)

Name: NF20172_high_1
Description: NF20172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20172_high_1
NF20172_high_1
[»] chr6 (6 HSPs)
chr6 (199-542)||(13309708-13310051)
chr6 (200-552)||(14591514-14591869)
chr6 (73-207)||(13309499-13309633)
chr6 (73-199)||(14591936-14592065)
chr6 (1-54)||(13309645-13309697)
chr6 (1-53)||(14591870-14591921)
[»] chr4 (3 HSPs)
chr4 (200-552)||(13936085-13936436)
chr4 (74-199)||(13935895-13936020)
chr4 (1-54)||(13936032-13936084)
[»] chr3 (4 HSPs)
chr3 (200-475)||(13787310-13787584)
chr3 (202-552)||(49281412-49281762)
chr3 (74-199)||(49281826-49281951)
chr3 (1-40)||(49281763-49281802)
[»] chr7 (3 HSPs)
chr7 (73-199)||(21280290-21280418)
chr7 (200-272)||(21279938-21280018)
chr7 (357-423)||(21280050-21280116)


Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 199 - 542
Target Start/End: Complemental strand, 13310051 - 13309708
Alignment:
Q  199 taataataatttggctattcatattaatctttatggcctttcagttttcaatttaagtaaaaatcaagagcaatttttatgccataatatattacataga 298  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13310051 taataataatttggctattcatattaatctttatggcctgtcagttttcagtttaagcaaaaatcaagagcaatttttatgccataatatattacataga 13309952  T
Q  299 acttgttagcaccaacaccatttgtaaacttgttcaaaatataaattatattaacttgtttgcattgactaacaacaaacttgcacaacacagccaatat 398  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  13309951 acttgttagcaccaacaccatttgtaaacttgttccaaatataaattatattaacttgtttgcattgactaacagcaaacttgcacaacacaaccaatat 13309852  T
Q  399 tagtaaatattatagttgtccaacagtatcaacagtataagtattataatatattacagccatccaatatttgagtagaagatgaaataaattccactgg 498  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  13309851 tagtaaatattacagttgtccaacaatatcaacagtataagtattataatatattacagtcatccaatatttgagtaaaagatgaaataaattccactgg 13309752  T
Q  499 ctttaaaagcacaggctgcttgcaattgccgatgctacaacatg 542  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  13309751 ctttaaaagcacaggctgcctgcaattgccgatgctacaacatg 13309708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 200 - 552
Target Start/End: Original strand, 14591514 - 14591869
Alignment:
Q  200 aataataatttggctattcatattaatctttatggcctttcagttttcaatttaagtaaaaatcaagagcaatttttatgccataatatatt---acata 296  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||   |||||    
T  14591514 aataataatttggctattcatattaatctttatggcctgtcagttttcagtttaaataaaaatcaagagcaatttttatgccataatatattattacata 14591613  T
Q  297 gaacttgttagcaccaacaccatttgtaaacttgttcaaaatataaattatattaacttgtttgcattgactaacaacaaacttgcacaacacagccaat 396  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  14591614 gaacttgttagcaccaacaacatttgtaaacttgttccaaatataaattatactaacttgtttgcattgactaacagcaaacttgcacaacacagccaat 14591713  T
Q  397 attagtaaatattatagttgtccaacagtatcaacagtataagtattataatatattacagccatccaatatttgagtagaagatgaaataaattccact 496  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||    
T  14591714 attagtaaatattacagttgtccaacagtatcaacattataagtattataatatattacagtcatccaatatttgagtaaaatatgaaataaattccact 14591813  T
Q  497 ggctttaaaagcacaggctgcttgcaattgccgatgctacaacatggaaaatcatg 552  Q
    |||||||||||||||| |||||||||||||  |||||||||||||||  |||||||    
T  14591814 ggctttaaaagcacagactgcttgcaattgttgatgctacaacatggcgaatcatg 14591869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 73 - 207
Target Start/End: Complemental strand, 13309633 - 13309499
Alignment:
Q  73 cctaaacaacaatatgtttaatgttctaaatttacaaatatgaatgaatgatatttgaaaacaaacctgaactgcagccctagaagtctataaaaaccaa 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||     
T  13309633 cctaaacaacaatatgtttaatgttctaaatttacaaatatgaatgaatgatatttgaaaacaaacctgaactgcagccctagaagtctacaacagccag 13309534  T
Q  173 tatcccacttaaattgcagcaaccattaataataa 207  Q
    |||||||||||||||||||||||||||||| ||||    
T  13309533 tatcccacttaaattgcagcaaccattaatgataa 13309499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 73 - 199
Target Start/End: Original strand, 14591936 - 14592065
Alignment:
Q  73 cctaaacaacaatatgtttaatgttctaaatttacaaatatgaatgaatgatatttgaaaacaaacctgaactgcagccctagaagtctataaaaaccaa 172  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||     
T  14591936 cctaaacaacaatatgttgaatgttataaatttacaaatatgaatgaatgatatttgaaaacaaacctaaactgcagccctagaagtctataacagccag 14592035  T
Q  173 tatcccac---ttaaattgcagcaaccatt 199  Q
     |||||||   |||||||||||||||||||    
T  14592036 aatcccacttattaaattgcagcaaccatt 14592065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13309697 - 13309645
Alignment:
Q  1 gagaatgatgttgtagttgatgctgcacaacaaatgaatggaatataactgttt 54  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  13309697 gagaatgatgttgtagttgatgttgcacaacaaaggaat-gaatataactgttt 13309645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 14591870 - 14591921
Alignment:
Q  1 gagaatgatgttgtagttgatgctgcacaacaaatgaatggaatataactgtt 53  Q
    |||||| ||||||||||||||||||||||||||| |||  |||||||||||||    
T  14591870 gagaataatgttgtagttgatgctgcacaacaaa-gaaatgaatataactgtt 14591921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 200 - 552
Target Start/End: Complemental strand, 13936436 - 13936085
Alignment:
Q  200 aataataatttggctattcatattaatctttatggcctttcagttttcaatttaagtaaaaatcaagagcaatttttatgccataatatattacatagaa 299  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  13936436 aataataatttggctattcatattaatctttatggcctgtcagttttcaatttaagtaaacatcaagagcaatttttatgccataatatattagatagaa 13936337  T
Q  300 cttgttagcaccaacaccatttgtaaacttgttcaaaatataaattatattaacttgtttgcattgactaacaacaaacttgcacaacacagccaatatt 399  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  13936336 cttgtttgcaccaacaccatttgtaaacttgttccaaatataaattatat-aacttgtttgcattgactaacaacaaacatgcacaacacagcaaatatt 13936238  T
Q  400 agtaaatattatagttgtccaacagtatcaacagtataagtattataatatattacagccatccaatatttgagtagaagatgaaataaattccactggc 499  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||    
T  13936237 agtaaatattacagttgtccaacagtatcaacagcataagtattataatatattacagtcatccaatatttgagtaaaagatgaaataaattccactagc 13936138  T
Q  500 tttaaaagcacaggctgcttgcaattgccgatgctacaacatggaaaatcatg 552  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  13936137 tttaaaagcacaggctgcttgcaattgccgatgctacaacatggcgaatcatg 13936085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 13936020 - 13935895
Alignment:
Q  74 ctaaacaacaatatgtttaatgttctaaatttacaaatatgaatgaatgatatttgaaaacaaacctgaactgcagccctagaagtctataaaaaccaat 173  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | | | |    
T  13936020 ctaaacaacaatatgtttaatgttctaaatttacaaatatgcatgaatgatatttgaaaacaaacctgaactggagccctagaagtctataacatctagt 13935921  T
Q  174 atcccacttaaattgcagcaaccatt 199  Q
    ||||||||||||||||||||||||||    
T  13935920 atcccacttaaattgcagcaaccatt 13935895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13936084 - 13936032
Alignment:
Q  1 gagaatgatgttgtagttgatgctgcacaacaaatgaatggaatataactgttt 54  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  13936084 gagaatgatgttgtagttgatgctgcacaacaaaggaat-gaatataactgttt 13936032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 200 - 475
Target Start/End: Complemental strand, 13787584 - 13787310
Alignment:
Q  200 aataataatttggctattcatattaatctttatggcctttcagttttcaatttaagtaaaaatcaagagcaatttttatgccataatatattacatagaa 299  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13787584 aataataatttggctattcatcttaatctttatggcctgtcagttttcagtttaagtaaaaatcaagagcaatttttatgccataatatattacatagaa 13787485  T
Q  300 cttgttagcaccaacaccatttgtaaacttgttcaaaatataaattatattaacttgtttgcattgactaacaacaaacttgcacaacacagccaatatt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13787484 cttgttagcaccaacaccatttgtaaacttgttcaaaatataaattatattaacttgtttgcattgactaacaacaaacttgcacaacacagccaatatt 13787385  T
Q  400 agtaaatattatagttgtccaacagtatcaacagtataagtattataatatattacagccatccaatatttgagta 475  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13787384 agtaaatattacagttgtccaacaatatcaacagtataagtattataatatattacag-catccaatatttgagta 13787310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 202 - 552
Target Start/End: Original strand, 49281412 - 49281762
Alignment:
Q  202 taataatttggctattcatattaatctttatggcctttcagttttcaatttaagtaaaaatcaagagcaatttttatgccataatatattacatagaact 301  Q
    |||||||||||||||||| |||||||||||||| || |||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  49281412 taataatttggctattcacattaatctttatggtctatcagttttcagtttaagtaaaaattaagagcaatttttatgccacaatatattacatagaact 49281511  T
Q  302 tgttagcaccaacaccatttgtaaacttgttcaaaatataaattatattaacttgtttgcattgactaacaacaaacttgcacaacacagccaatattag 401  Q
    |||| || || ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||||  |||||| ||| ||||||||||    
T  49281512 tgtttgcgccgacaccatttgtaaacttgttccaaatataaattata-taacttgtttgcattgact-acagcaaacaagcacaatacaaccaatattag 49281609  T
Q  402 taaatattatagttgtccaacagtatcaacagtataagtattataatatattacagccatcca--atatttgagtagaagatgaaataaattccactggc 499  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||  ||||||||||| |||||||||||||||||||||||    
T  49281610 taaatattacagttgtccaacggtatcaacaatataagtattataatatattacagtcatccaatatatttgagtaaaagatgaaataaattccactggc 49281709  T
Q  500 tttaaaagcacaggctgcttgcaattgccgatgctacaacatggaaaatcatg 552  Q
    |||||||||||||||||||| ||||||| |||||||||||||||  |||||||    
T  49281710 tttaaaagcacaggctgcttacaattgctgatgctacaacatggcgaatcatg 49281762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 74 - 199
Target Start/End: Original strand, 49281826 - 49281951
Alignment:
Q  74 ctaaacaacaatatgtttaatgttctaaatttacaaatatgaatgaatgatatttgaaaacaaacctgaactgcagccctagaagtctataaaaaccaat 173  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |    
T  49281826 ctaaacaacaatatgtttaatgttctaaatttacaaatatgcatgaatgatatttgaaaacaaacctgaactgcagccctagaagtctataacatccagt 49281925  T
Q  174 atcccacttaaattgcagcaaccatt 199  Q
    ||||||||||||||||||||||||||    
T  49281926 atcccacttaaattgcagcaaccatt 49281951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 49281763 - 49281802
Alignment:
Q  1 gagaatgatgttgtagttgatgctgcacaacaaatgaatg 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  49281763 gagaatgatgttgtagttgatgctgcacaacaaaggaatg 49281802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 73 - 199
Target Start/End: Original strand, 21280290 - 21280418
Alignment:
Q  73 cctaaacaacaatatgtttaatgttctaaatttacaaatatgaatgaatgatatttgaaaacaaacctgaactgcagc--cctagaagtctataaaaacc 170  Q
    |||||||||||||||||| ||||||||||||||| ||||||| || |||||| |||||||||||||||||||||||||   |||||||||||||| |  |    
T  21280290 cctaaacaacaatatgttcaatgttctaaatttaaaaatatgcataaatgatgtttgaaaacaaacctgaactgcagctttctagaagtctataacagtc 21280389  T
Q  171 aatatcccacttaaattgcagcaaccatt 199  Q
     | |||||||| |||||||||||| ||||    
T  21280390 taaatcccactgaaattgcagcaatcatt 21280418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 21279938 - 21280018
Alignment:
Q  200 aataataatttggctattcatattaatctttatggcctttcagttttc--------aatttaagtaaaaatcaagagcaat 272  Q
    |||||| ||||||| ||||||||||||||||||||||| ||| |||||        |||||||||||||||||||||||||    
T  21279938 aataatcatttggccattcatattaatctttatggcctgtcaattttctaattgaaaatttaagtaaaaatcaagagcaat 21280018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 423
Target Start/End: Original strand, 21280050 - 21280116
Alignment:
Q  357 tttgcattgactaacaacaaacttgcacaacacagccaatattagtaaatattatagttgtccaaca 423  Q
    |||||| ||||| | | ||||| ||||||||||| ||||||||| ||||||||||||| ||||||||    
T  21280050 tttgcactgactgatagcaaacatgcacaacacaaccaatattaataaatattatagtcgtccaaca 21280116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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