View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20172_high_1_N (Length: 845)

Name: NF20172_high_1_N
Description: NF20172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20172_high_1_N
NF20172_high_1_N
[»] chr8 (5 HSPs)
chr8 (542-845)||(4365748-4366051)
chr8 (197-473)||(4366050-4366326)
chr8 (19-193)||(4366305-4366484)
chr8 (122-180)||(27924489-27924547)
chr8 (126-172)||(37940455-37940501)
[»] chr4 (3 HSPs)
chr4 (118-193)||(47742777-47742852)
chr4 (118-192)||(26194542-26194616)
chr4 (123-176)||(21139319-21139372)
[»] chr2 (4 HSPs)
chr2 (123-194)||(33635700-33635771)
chr2 (118-192)||(8329654-8329728)
chr2 (118-193)||(45716483-45716558)
chr2 (118-193)||(36101005-36101076)
[»] chr3 (4 HSPs)
chr3 (118-193)||(50662464-50662539)
chr3 (122-193)||(40892801-40892872)
chr3 (118-180)||(9099174-9099236)
chr3 (118-180)||(23086445-23086507)
[»] chr1 (1 HSPs)
chr1 (118-193)||(963957-964032)
[»] scaffold0009 (1 HSPs)
scaffold0009 (118-180)||(140308-140370)
[»] chr5 (3 HSPs)
chr5 (118-180)||(14148319-14148381)
chr5 (118-180)||(26440087-26440149)
chr5 (118-180)||(36301223-36301285)
[»] chr7 (1 HSPs)
chr7 (118-193)||(45879116-45879191)


Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 542 - 845
Target Start/End: Complemental strand, 4366051 - 4365748
Alignment:
Q  542 tgattgaatgtttgttgttgtgagctgatttttattgcatacaaaatgataattagtttgcatgttgtttttaattgagtttgatgggtatgagttagtt 641  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4366051 tgattgaatgtttgttgttatgagatgatttttgttgcatacaaaatgataattagtttgcatgttgtttttaattgagtttgatgggtatgagttagtt 4365952  T
Q  642 tataactgaaataaatcattacggagatgaacttgaagtttggttccggatatgaactttgtacatgcttaaaaagaaagaaagatacttatttagatga 741  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4365951 tataactgaaataaatcattacggatatgaacttgaagtttggttccggatatgaactttgtacatgcttaaaaagaaagaaagatacttgtttagatga 4365852  T
Q  742 actagagaaagcatgaaaactactgcataaaacatgttcagtgtgtgatttttcataaattcttggaacaatatttttagacgggaccaattgcatcatg 841  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4365851 actagagaaagcctgaaaactactgcacaaaacatgttcagtgtgtgatttttcataaattcttggaacaatatttttagacgggaccaattgcatcatg 4365752  T
Q  842 ttca 845  Q
    ||||    
T  4365751 ttca 4365748  T

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Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 197 - 473
Target Start/End: Complemental strand, 4366326 - 4366050
Alignment:
Q  197 aagttaaaagtgtgttcttttcggtgaagagggagagagaatcaaccccaaacccactccttgtccatcaattgagaagaatcaaaattcaaacccctta 296  Q
    ||||||||||| |||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  4366326 aagttaaaagtatgttcttttccgcgaaaagggagagagaatcaaccccaaaccctctccttgtccatcaatagagaagaatcaaaattcaaacccctta 4366227  T
Q  297 attctccctatgtgggcagcaacttagaaggagaagaagtaattagagatgaagagaagtcacgagaatggaagcttggaattgtagagatcaaagtcaa 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4366226 attctccctatgtgggcagcaacttagaaggagaagaagtaattagagatgaagagaagtcacgagaatggaagcttggaattgtagagatcaaagtcaa 4366127  T
Q  397 tttggaaatttcatcaatctcttcttaagagagcctaaggtaacatagaatcccttccctaaaacatctatagggtg 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4366126 tttggaaatttcatcaatctcttcttaagagagcctaaggtaacatagaatcccttccttaaaacatctatagggtg 4366050  T

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Target: chr8; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 4366484 - 4366305
Alignment:
Q  19 atcatcacattgatagtggaatcttttgtctttaaatatatggttatattaacaattgtttttaagtttggagaaaaattaacaaatgccttcaaggta- 117  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||  |||  | ||     
T  4366484 atcatcacattgatagtggaatcttttctctttaaatatatagttatattaacaattgtttttaagtttagagaaaaattaacaagtgttttcgggatac 4366385  T
Q  118 ----taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 193  Q
        |||||||| ||||||| ||||||||| ||| || | ||||||||||||||||||||||||||||| ||||||||||    
T  4366384 ttgttaaggaatcataaaatgaaatattattttgaaaattatgtattctactttttaaaagttaaaagtatgttcttttc 4366305  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 27924489 - 27924547
Alignment:
Q  122 gaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaa 180  Q
    |||||| |||| |||||||||||||| || | |||||||||||||||| ||||||||||    
T  27924489 gaattagaaaagaaaatattatcttgaaaattatgtattctactttttgaaagttaaaa 27924547  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 37940455 - 37940501
Alignment:
Q  126 tataaaataaaatattatcttggaagtcatgtattctactttttaaa 172  Q
    ||||||| ||||||||||||||||| |  ||||||||||||||||||    
T  37940455 tataaaagaaaatattatcttggaaattgtgtattctactttttaaa 37940501  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 47742852 - 47742777
Alignment:
Q  118 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 193  Q
    |||||||||||||||  |||||||||||||||| |  |||||| ||| |||||||||||||||  |||||||||||    
T  47742852 taaggaattataaaaggaaatattatcttggaatttgtgtattatacattttaaaagttaaaaaagtgttcttttc 47742777  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 26194542 - 26194616
Alignment:
Q  118 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttctttt 192  Q
    |||||||||||||||| ||||||||||||| || |  ||||||| ||||||||||| || |||  ||||||||||    
T  26194542 taaggaattataaaatgaaatattatcttgtaaattgtgtattcaactttttaaaaattgaaaaagtgttctttt 26194616  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 21139372 - 21139319
Alignment:
Q  123 aattataaaataaaatattatcttggaagtcatgtattctactttttaaaagtt 176  Q
    |||||||||| |||| ||||||||| || | |||||||||||||||| ||||||    
T  21139372 aattataaaagaaaacattatcttgaaaattatgtattctactttttgaaagtt 21139319  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 194
Target Start/End: Original strand, 33635700 - 33635771
Alignment:
Q  123 aattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttcg 194  Q
    |||||||||| |||||||| |||||||| |  ||||||||||||||||||||||||||  || |||||||||    
T  33635700 aattataaaagaaaatattgtcttggaaattgtgtattctactttttaaaagttaaaaaagtattcttttcg 33635771  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 8329654 - 8329728
Alignment:
Q  118 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttctttt 192  Q
    |||||||||||| ||  ||||||||| |||||| | |||||||||||||||| ||||||||||  ||||||||||    
T  8329654 taaggaattatataaggaaatattattttggaaattatgtattctactttttgaaagttaaaatggtgttctttt 8329728  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 45716558 - 45716483
Alignment:
Q  118 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 193  Q
    |||||||||||||||  ||||||| |||||||| | ||| |||||||||||| ||||||||||  ||||| |||||    
T  45716558 taaggaattataaaaggaaatattgtcttggaaattatggattctactttttgaaagttaaaaaagtgttattttc 45716483  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 36101005 - 36101076
Alignment:
Q  118 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 193  Q
    |||| ||||||||||  ||||||| ||||||||    ||||||||||||||| |||||||||| | ||||||||||    
T  36101005 taagaaattataaaaggaaatattgtcttggaa----tgtattctactttttgaaagttaaaaatatgttcttttc 36101076  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 50662539 - 50662464
Alignment:
Q  118 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 193  Q
    |||||||||||||||||||||||||| |||||| |  | ||||||||||||| ||||| ||||   ||||||||||    
T  50662539 taaggaattataaaataaaatattatattggaaattttctattctactttttgaaagtcaaaaaaatgttcttttc 50662464  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 40892801 - 40892872
Alignment:
Q  122 gaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 193  Q
    |||||||||||  ||||||| |||||||| |  ||||||||||||||| |||||||| |  |||||||||||    
T  40892801 gaattataaaaggaaatattttcttggaaattgtgtattctactttttgaaagttaataaagtgttcttttc 40892872  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 9099236 - 9099174
Alignment:
Q  118 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaa 180  Q
    |||||||||||||||  ||||||| | |||||| || ||||||| ||||||| ||||||||||    
T  9099236 taaggaattataaaaggaaatattgtattggaaatcgtgtattcaactttttgaaagttaaaa 9099174  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 23086445 - 23086507
Alignment:
Q  118 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaa 180  Q
    ||||||||||||||| |||||||| | || ||| |  |||||| |||||||||||||||||||    
T  23086445 taaggaattataaaaaaaaatattgttttagaaattgtgtattatactttttaaaagttaaaa 23086507  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 963957 - 964032
Alignment:
Q  118 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 193  Q
    ||||||||||||| |  ||||||| |||||||| |  ||||||||||||||| ||||||||||  |||||||||||    
T  963957 taaggaattataataggaaatattgtcttggaaattgtgtattctactttttcaaagttaaaaaagtgttcttttc 964032  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 140370 - 140308
Alignment:
Q  118 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaa 180  Q
    |||||||||||||||| |||| |||||||| || | |||||||||| ||||| ||||||||||    
T  140370 taaggaattataaaatgaaattttatcttgaaaattatgtattctattttttgaaagttaaaa 140308  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 14148381 - 14148319
Alignment:
Q  118 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaa 180  Q
    |||||||||||||||  | |||||||||||||| |  ||||||||||||||| ||||||||||    
T  14148381 taaggaattataaaaagacatattatcttggaaattgtgtattctactttttgaaagttaaaa 14148319  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 26440087 - 26440149
Alignment:
Q  118 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaa 180  Q
    |||||||||||||||| ||||||  | || ||| |  ||||||||||||||||||||||||||    
T  26440087 taaggaattataaaatgaaatatctttttagaaattgtgtattctactttttaaaagttaaaa 26440149  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 36301223 - 36301285
Alignment:
Q  118 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaa 180  Q
    ||||||||||||||| |||||||||| || ||| |  |||||| ||| |||||||||||||||    
T  36301223 taaggaattataaaagaaaatattattttagaaattgtgtattttacattttaaaagttaaaa 36301285  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 45879116 - 45879191
Alignment:
Q  118 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 193  Q
    |||||||||||||||  |||| || |||||||| |  ||||||||||||||| |||| ||||| |||||| |||||    
T  45879116 taaggaattataaaaggaaattttgtcttggaaattgtgtattctactttttgaaaggtaaaaatgtgtttttttc 45879191  T

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