View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20172_high_3 (Length: 321)

Name: NF20172_high_3
Description: NF20172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20172_high_3
NF20172_high_3
[»] chr3 (3 HSPs)
chr3 (1-141)||(13787444-13787584)
chr3 (142-267)||(49281826-49281951)
chr3 (1-139)||(49281412-49281550)
[»] chr6 (4 HSPs)
chr6 (1-142)||(13309910-13310051)
chr6 (134-268)||(13309499-13309633)
chr6 (1-141)||(14591514-14591657)
chr6 (142-268)||(14591936-14592065)
[»] chr4 (2 HSPs)
chr4 (1-141)||(13936296-13936436)
chr4 (142-267)||(13935895-13936020)
[»] chr7 (2 HSPs)
chr7 (142-268)||(21280290-21280418)
chr7 (69-141)||(21279938-21280018)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 9e-67; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 13787444 - 13787584
Alignment:
Q  1 atattttgaacaagtttacaaatggtgttggtgctaacaagttctatgtaatatattatggcataaaaattgctcttgatttttacttaaattgaaaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13787444 atattttgaacaagtttacaaatggtgttggtgctaacaagttctatgtaatatattatggcataaaaattgctcttgatttttacttaaactgaaaact 13787543  T
Q  101 gaaaggccataaagattaatatgaatagccaaattattatt 141  Q
    || |||||||||||||||| |||||||||||||||||||||    
T  13787544 gacaggccataaagattaagatgaatagccaaattattatt 13787584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 142 - 267
Target Start/End: Complemental strand, 49281951 - 49281826
Alignment:
Q  142 aatggttgctgcaatttaagtgggatattggtttttatagacttctagggctgcagttcaggtttgttttcaaatatcattcattcatatttgtaaattt 241  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49281951 aatggttgctgcaatttaagtgggatactggatgttatagacttctagggctgcagttcaggtttgttttcaaatatcattcatgcatatttgtaaattt 49281852  T
Q  242 agaacattaaacatattgttgtttag 267  Q
    ||||||||||||||||||||||||||    
T  49281851 agaacattaaacatattgttgtttag 49281826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 49281550 - 49281412
Alignment:
Q  1 atattttgaacaagtttacaaatggtgttggtgctaacaagttctatgtaatatattatggcataaaaattgctcttgatttttacttaaattgaaaact 100  Q
    |||||| ||||||||||||||||||||| || || |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||    
T  49281550 atatttggaacaagtttacaaatggtgtcggcgcaaacaagttctatgtaatatattgtggcataaaaattgctcttaatttttacttaaactgaaaact 49281451  T
Q  101 gaaaggccataaagattaatatgaatagccaaattatta 139  Q
    || || |||||||||||||| ||||||||||||||||||    
T  49281450 gatagaccataaagattaatgtgaatagccaaattatta 49281412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 6e-65; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 13309910 - 13310051
Alignment:
Q  1 atattttgaacaagtttacaaatggtgttggtgctaacaagttctatgtaatatattatggcataaaaattgctcttgatttttacttaaattgaaaact 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  13309910 atatttggaacaagtttacaaatggtgttggtgctaacaagttctatgtaatatattatggcataaaaattgctcttgatttttgcttaaactgaaaact 13310009  T
Q  101 gaaaggccataaagattaatatgaatagccaaattattatta 142  Q
    || |||||||||||||||||||||||||||||||||||||||    
T  13310010 gacaggccataaagattaatatgaatagccaaattattatta 13310051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 134 - 268
Target Start/End: Original strand, 13309499 - 13309633
Alignment:
Q  134 ttattattaatggttgctgcaatttaagtgggatattggtttttatagacttctagggctgcagttcaggtttgttttcaaatatcattcattcatattt 233  Q
    |||| |||||||||||||||||||||||||||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13309499 ttatcattaatggttgctgcaatttaagtgggatactggctgttgtagacttctagggctgcagttcaggtttgttttcaaatatcattcattcatattt 13309598  T
Q  234 gtaaatttagaacattaaacatattgttgtttagg 268  Q
    |||||||||||||||||||||||||||||||||||    
T  13309599 gtaaatttagaacattaaacatattgttgtttagg 13309633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 14591657 - 14591514
Alignment:
Q  1 atattttgaacaagtttacaaatggtgttggtgctaacaagttctatgtaata---tattatggcataaaaattgctcttgatttttacttaaattgaaa 97  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||| |||||    
T  14591657 atatttggaacaagtttacaaatgttgttggtgctaacaagttctatgtaataatatattatggcataaaaattgctcttgatttttatttaaactgaaa 14591558  T
Q  98 actgaaaggccataaagattaatatgaatagccaaattattatt 141  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  14591557 actgacaggccataaagattaatatgaatagccaaattattatt 14591514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 142 - 268
Target Start/End: Complemental strand, 14592065 - 14591936
Alignment:
Q  142 aatggttgctgcaatttaa---gtgggatattggtttttatagacttctagggctgcagttcaggtttgttttcaaatatcattcattcatatttgtaaa 238  Q
    |||||||||||||||||||   |||||||  ||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14592065 aatggttgctgcaatttaataagtgggattctggctgttatagacttctagggctgcagtttaggtttgttttcaaatatcattcattcatatttgtaaa 14591966  T
Q  239 tttagaacattaaacatattgttgtttagg 268  Q
    |||| |||||| ||||||||||||||||||    
T  14591965 tttataacattcaacatattgttgtttagg 14591936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 13936296 - 13936436
Alignment:
Q  1 atattttgaacaagtttacaaatggtgttggtgctaacaagttctatgtaatatattatggcataaaaattgctcttgatttttacttaaattgaaaact 100  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13936296 atatttggaacaagtttacaaatggtgttggtgcaaacaagttctatctaatatattatggcataaaaattgctcttgatgtttacttaaattgaaaact 13936395  T
Q  101 gaaaggccataaagattaatatgaatagccaaattattatt 141  Q
    || ||||||||||||||||||||||||||||||||||||||    
T  13936396 gacaggccataaagattaatatgaatagccaaattattatt 13936436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 142 - 267
Target Start/End: Original strand, 13935895 - 13936020
Alignment:
Q  142 aatggttgctgcaatttaagtgggatattggtttttatagacttctagggctgcagttcaggtttgttttcaaatatcattcattcatatttgtaaattt 241  Q
    ||||||||||||||||||||||||||| | | | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  13935895 aatggttgctgcaatttaagtgggatactagatgttatagacttctagggctccagttcaggtttgttttcaaatatcattcatgcatatttgtaaattt 13935994  T
Q  242 agaacattaaacatattgttgtttag 267  Q
    ||||||||||||||||||||||||||    
T  13935995 agaacattaaacatattgttgtttag 13936020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 142 - 268
Target Start/End: Complemental strand, 21280418 - 21280290
Alignment:
Q  142 aatggttgctgcaatttaagtgggatattggtttttatagacttctagg--gctgcagttcaggtttgttttcaaatatcattcattcatatttgtaaat 239  Q
    |||| |||||||||||| |||||||| | |  | ||||||||||||||   ||||||||||||||||||||||||| |||||| || ||||||| |||||    
T  21280418 aatgattgctgcaatttcagtgggatttagactgttatagacttctagaaagctgcagttcaggtttgttttcaaacatcatttatgcatatttttaaat 21280319  T
Q  240 ttagaacattaaacatattgttgtttagg 268  Q
    |||||||||| ||||||||||||||||||    
T  21280318 ttagaacattgaacatattgttgtttagg 21280290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 21280018 - 21279938
Alignment:
Q  69 attgctcttgatttttacttaaatt--------gaaaactgaaaggccataaagattaatatgaatagccaaattattatt 141  Q
    |||||||||||||||||||||||||        ||||| ||| ||||||||||||||||||||||| ||||||| ||||||    
T  21280018 attgctcttgatttttacttaaattttcaattagaaaattgacaggccataaagattaatatgaatggccaaatgattatt 21279938  T

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