View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20172_low_2 (Length: 231)
Name: NF20172_low_2
Description: NF20172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20172_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 1088108 - 1087907
Alignment:
| Q |
16 |
catatagaacaaccactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtca |
115 |
Q |
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| T |
1088108 |
catatagaacaaccactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtca |
1088009 |
T |
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| Q |
116 |
tattagcatcaacccaagtatgtgatgtatccggcaatttcaatccataaaatcttacaaaaccatcattcaccccacatctccaatcttcttcaccttt |
215 |
Q |
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| T |
1088008 |
tatttgcatcaacccaagtatgtgatgtatctggcaatttcaatccataaaatcttacaaaactatcattcactccacatctccaatcttcgtcaccttt |
1087909 |
T |
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| Q |
216 |
gc |
217 |
Q |
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|| |
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| T |
1087908 |
gc |
1087907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 1047634 - 1047456
Alignment:
| Q |
16 |
catatagaacaaccactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtca |
115 |
Q |
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| T |
1047634 |
catatagaacaaccactgccatctccagccacatccaagtttgaataagccatgcaagaacaattttccaagcatttatttttacaattctcaagtgtca |
1047535 |
T |
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| Q |
116 |
tattagcatcaacccaagtatgtgatgtatccggcaatttcaatccataaaatcttacaaaaccatcattcaccccaca |
194 |
Q |
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| T |
1047534 |
tattagcatcaacccaagtatgtgttgtatctggcaatttcaatccagaaaatgttccaaaaccatcattcacaccaca |
1047456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 1072411 - 1072246
Alignment:
| Q |
52 |
aagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtgatgtatccggca |
151 |
Q |
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| T |
1072411 |
aagtttgaataagccatacaagaacaatcttccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtgttgtatctggca |
1072312 |
T |
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| Q |
152 |
atttcaatccataaaatcttacaaaaccatcattcaccccacatctccaatcttcttcacctttgc |
217 |
Q |
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| T |
1072311 |
atttcaatccagaaaatgttctaaaacgatcattcacaccacaattccatgtttcttcacctttgc |
1072246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 1104661 - 1104483
Alignment:
| Q |
16 |
catatagaacaaccactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtca |
115 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
1104661 |
catatagaacaaccactaccatctcccctaacatctaagtttgaataagccatgcaagaacaattttccaagcatttgttcttacaattctcaagtgtca |
1104562 |
T |
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| Q |
116 |
tattagcatcaacccaagtatgtgatgtatccggcaatttcaatccataaaatcttacaaaaccatcattcaccccaca |
194 |
Q |
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||||| |||||||||||| ||||| ||| || ||||||||||| | | ||||| || |||||||||||||||| ||||| |
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| T |
1104561 |
tattaccatcaacccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccaca |
1104483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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