View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20173_high_7 (Length: 250)
Name: NF20173_high_7
Description: NF20173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20173_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 8111316 - 8111075
Alignment:
| Q |
1 |
tcaatttcggtgaaaatatggagaactactattctcctatggatcaggtggaacagaaaccattggttaacaaccaatatgctgacatcggagccttctc |
100 |
Q |
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| T |
8111316 |
tcaatttcagtgaaaatatggagaactactattctcctatggatcaggtggaacagaaaccattggttaacaaccaatatgctgacatcggagccttctc |
8111217 |
T |
|
| Q |
101 |
cggaaacggagtgcagcttacatctgctgatgttaatgcttatttcagttcagagcattcaagcaattcatttgattattctgatctatgttggggcgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8111216 |
cggaaacggagtgcagcttacatctgctgatgttaatgcttatttcagttcagagcattcaagcaattcatttgattattctgatctatgttggggtgaa |
8111117 |
T |
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| Q |
201 |
caaggcgcaaaaacacctgagatttcgtctgtgttctctgct |
242 |
Q |
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| T |
8111116 |
caaggcgcaaaaacacctgagatttcgtctgtgttttctgct |
8111075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 45437567 - 45437802
Alignment:
| Q |
10 |
gtgaaaatatggagaactactattctcctatggatcaggtggaacagaaaccattggttaacaaccaatatgctgacatcggagccttctccggaaacgg |
109 |
Q |
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|||||||||| |||||||||||||| || || ||||||||||||||| ||||||||||||| ||||| |||| | ||||| |||| | |||||||| |
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| T |
45437567 |
gtgaaaatatagagaactactattccccagtgaatcaggtggaacagagaccattggttaacgcccaatgtgctaatgtcggaccctttgctggaaacgg |
45437666 |
T |
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| Q |
110 |
agtgcagcttacatctgctgatgttaatgcttatttcagttcagagcattcaagcaattcatttgattattctgatctatgttggggcgaacaaggcgca |
209 |
Q |
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| T |
45437667 |
tgttcagcttgcatcttctgatgttactgcatatttcagttcggagtattcgagcaattcatttgattatcctgatctatgttggggtgaacaaggcccg |
45437766 |
T |
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| Q |
210 |
aaaacacctgagatttcgtctgtgttctctgctcct |
245 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||| |
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| T |
45437767 |
aaaacacctgagatttcatctgtgttttctgctcct |
45437802 |
T |
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