View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20173_high_8 (Length: 248)
Name: NF20173_high_8
Description: NF20173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20173_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 46998130 - 46997907
Alignment:
| Q |
1 |
accatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46998130 |
accatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatgg |
46998031 |
T |
|
| Q |
101 |
aactggttattggaatttctttaacttattttctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctactcacaataaatgg |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
46998030 |
aactggttattggaatttctttaactcattttctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctattcacaatagatgg |
46997931 |
T |
|
| Q |
201 |
tttccagaaggttatggtccaatc |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
46997930 |
tttccagaaggttatggtccaatc |
46997907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 47001822 - 47001603
Alignment:
| Q |
1 |
accatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatgg |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47001822 |
accatgatggtcacaccatgtctttgttgtctattcaagtcactgaattattggatggtgttttcataggttgttccatgaatcattgtattggtgatgg |
47001723 |
T |
|
| Q |
101 |
aactggttattggaatttctttaacttattttctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctactcacaataaatgg |
200 |
Q |
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||| | ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |
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| T |
47001722 |
aacagcttattggaatttcttcaacacattttcggagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctattcacaaaagatgg |
47001623 |
T |
|
| Q |
201 |
tttccagaaggttatggtcc |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
47001622 |
tttccagaaggttatggtcc |
47001603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 46975066 - 46974848
Alignment:
| Q |
2 |
ccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatgga |
101 |
Q |
| |
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||||||||| || ||||||||||| || | |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46975066 |
ccatgatggtcataccatgtctttattaactattcaagtaactgaattattggatggtgtttttataggttgttccatgaatcattgtataggtgatggg |
46974967 |
T |
|
| Q |
102 |
actggttattggaatttctttaacttattttctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctactcacaataaatggt |
201 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||| ||||| |
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| T |
46974966 |
actggttattggaatttctttaactcattttctgagatatttcaaaatgatattcatgttcttgttccgatttcacatcaacctatccacaatagatggt |
46974867 |
T |
|
| Q |
202 |
ttccagaaggttatggtcc |
220 |
Q |
| |
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||||| ||||||||||||| |
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| T |
46974866 |
ttccacaaggttatggtcc |
46974848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 46981054 - 46980834
Alignment:
| Q |
1 |
accatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatgg |
100 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||||| ||||||||| | ||| ||||||| || ||||||||||||||||||||| || ||||||| |
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| T |
46981054 |
accatgatggtcataccatgtctttgttgtctattcaagtcactgaattagtagatggtgttttcattggttgttccatgaatcattgtctttgtgatgg |
46980955 |
T |
|
| Q |
101 |
aactggttattggaatttctttaacttattttctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctactcacaataaatgg |
200 |
Q |
| |
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||| | ||||||||||||||| ||| ||||||||||||||||||||||||||||| || | | |||| ||||||||| |||||| ||||| | |||| |
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| T |
46980954 |
aacagcttattggaatttcttcaacacattttctgagatatttcaaaatgatgttcctgctgc--ttcccatttcacatcaacctatccacaagagatgg |
46980857 |
T |
|
| Q |
201 |
tttccagaaggttatggtccaat |
223 |
Q |
| |
|
|||||| |||||||||||||||| |
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| T |
46980856 |
tttccacaaggttatggtccaat |
46980834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 46995882 - 46995648
Alignment:
| Q |
1 |
accatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||||||||| || | |||||||||| |
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| T |
46995882 |
accatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgttggtgatgg |
46995783 |
T |
|
| Q |
101 |
aactggttattggaatttctttaacttattttctgagatatttcaaaa------------tgatgttcatgttcctgttccgatttcacataaacctact |
188 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||||||||||| |||||||||| |||||||||| |||||||| |||||| | |
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| T |
46995782 |
aactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgttcatattcctgttcctatttcacaccaacctatt |
46995683 |
T |
|
| Q |
189 |
cacaataaatggtttccagaaggttatggtccaat |
223 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||||| |
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| T |
46995682 |
cacaatagatggtttcctgaaggctatggtccaat |
46995648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 46955960 - 46955842
Alignment:
| Q |
3 |
catgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatggaa |
102 |
Q |
| |
|
|||||||| ||||||||| | ||| | ||||||||||| || |||||| |||| ||||||| ||||||||||||||||| ||||||||||||||||| | |
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| T |
46955960 |
catgatggtcacaccatgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgtattggtgatggga |
46955861 |
T |
|
| Q |
103 |
ctggttattggaatttctt |
121 |
Q |
| |
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|| || |||||||||||| |
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| T |
46955860 |
cttctttttggaatttctt |
46955842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 46951614 - 46951502
Alignment:
| Q |
12 |
cacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatggaactggttatt |
111 |
Q |
| |
|
||||||||| | ||||| ||||| ||||| ||||| || | ||| ||||||| ||||||||||| |||||||| | |||||||||||||||| ||||| |
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|
| T |
46951614 |
cacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatattggtgatggaacttcttatt |
46951515 |
T |
|
| Q |
112 |
ggaatttctttaa |
124 |
Q |
| |
|
||||||||||||| |
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|
| T |
46951514 |
ggaatttctttaa |
46951502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 46958807 - 46958673
Alignment:
| Q |
12 |
cacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatggaactggttatt |
111 |
Q |
| |
|
||||||||| | ||||| || |||||||| || || || ||||| ||||||| |||||||||||| |||||||||||||||||||||| || || | |
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| T |
46958807 |
cacaccatgccattgttatcaattcaagtcacagagctagtggatggtgttttcataggttgttccctgaatcattgtattggtgatggtacctctttct |
46958708 |
T |
|
| Q |
112 |
ggaatttctttaacttattttctgagatatttcaa |
146 |
Q |
| |
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||||||| ||||| ||| ||||||||||||||| |
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|
| T |
46958707 |
ggaatttttttaatatatggtctgagatatttcaa |
46958673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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