View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20173_low_12 (Length: 249)
Name: NF20173_low_12
Description: NF20173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20173_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 39803391 - 39803171
Alignment:
| Q |
18 |
atcatatacattttagcagcactgttattcattttcaataaacaattcaaagttcataaatataggggacactgaattatttggaacttaaattacatca |
117 |
Q |
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| T |
39803391 |
atcataaacattttagcagcactcttattcattttcaataaacaattcaaagttcataaatataggggacactgaattatttggaacttaaattacatca |
39803292 |
T |
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| Q |
118 |
aagaaaagctcaactttttctctccccttatcttccnnnnnnnnaacatccaaaccactcttaatttgttggcaaacaaatttattaacattaattaaca |
217 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39803291 |
aagaaaagctcaattttttctctccccttatcttcc-tttttttaacatccaaaccactcttaatttgttggcaaacaaatttattaacattaattaaca |
39803193 |
T |
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| Q |
218 |
aataatctatagtcaccctttg |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
39803192 |
aataatctatagtcaccctttg |
39803171 |
T |
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