View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20173_low_18 (Length: 206)
Name: NF20173_low_18
Description: NF20173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20173_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 12440571 - 12440401
Alignment:
| Q |
17 |
aatctcacatagtcattcaacctttgaggttgttgaatgttctttgttggcttgtttacacctccttcctctgcaacttcaatattctctacttgttctt |
116 |
Q |
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| T |
12440571 |
aatctcacatagtcattcaacctttgaggttgttgaatgttccttgctggcttgtttacacctccttcctctgtaacttcaatattctctacttgttctt |
12440472 |
T |
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| Q |
117 |
caagttcatgctaatctgattcagattctgacaaacagaactgattgtcagttttacctgatgtcttgcct |
187 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
12440471 |
caagttcatgctaatctgattcagattctgacaaacataactgattgtcagttttacatgatgtcttgcct |
12440401 |
T |
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