View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20173_low_3 (Length: 342)
Name: NF20173_low_3
Description: NF20173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20173_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 19937114 - 19937383
Alignment:
| Q |
5 |
ggagggaacatgctgctgacttgaattttgaagaggtagagtttctactgcagaagtaggccgagagagttgttgttgtggctgagattgcaagttggtt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
19937114 |
ggagggaacatgctgctgacttgaattttgaagaggtagagtttttgctgcagaagtaggccgatagagctgttgttgtggctgagattgcaagttggtt |
19937213 |
T |
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| Q |
105 |
agctctgtaaagaccggacttgagtgctgagtcggaatagcttcctctgtagcagctggccgagaaacaggttgttggaaggctgcagatgagcctatac |
204 |
Q |
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||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
19937214 |
agctctgtagggatcagacttgagtgctgagtcggaatagcttcctctgtagcagctggccgagaaataggttgttggaaagctgcagatgagcctatac |
19937313 |
T |
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| Q |
205 |
ctgaagggttatccttaagaggaacccattcagtcctctgtgttggcatttgcttcttaccctgagcaac |
274 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19937314 |
ctgaagggttgtccttaagaggaacccattcagtcctctgtgttggcatttgcttcttaccctgagcaac |
19937383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 19937419 - 19937459
Alignment:
| Q |
292 |
gtggatgaatccaccgacaaactgaaacatgatgccctatg |
332 |
Q |
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| T |
19937419 |
gtggatgaatccaccgacaaactgaaatatgatgccctatg |
19937459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 8479072 - 8478801
Alignment:
| Q |
5 |
ggagggaacatgctgctgacttgaattttgaagaggtagagtttctactgcagaagtaggccgagagagttgttgttgtggctgagattgcaagttggtt |
104 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8479072 |
ggagggaacatgctgctgatttgaattttgaagaggtagagtttctgctgcagaagtaggccgagagagttgttattgtggctgagattgcaagttggtt |
8478973 |
T |
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| Q |
105 |
agctctgtaaagaccggacttgagtgctgagtcggaatagcttcctctgtagcagctggccgagaaacaggttgttggaaggctgcagatgagcctatac |
204 |
Q |
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||||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8478972 |
agctctgtagggactggacttgagttctgagtcggaatagcttccttggtagcagctggccgagaaacaggttgttggaaggctgcagatgagcctatac |
8478873 |
T |
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| Q |
205 |
ctgaagggttatccttaagaggaacccattc---agtcctctgtgttggcatttgcttcttaccctgagcaa |
273 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||| |
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| T |
8478872 |
ctgaagggttgtccttaagaggaacccattcatgagtcctctgtgttggcattggcttcttcccctgagcaa |
8478801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 8478764 - 8478724
Alignment:
| Q |
292 |
gtggatgaatccaccgacaaactgaaacatgatgccctatg |
332 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8478764 |
gtggatgaatccaccgacaaactgaaatatgatgccctatg |
8478724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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