View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20173_low_6 (Length: 284)

Name: NF20173_low_6
Description: NF20173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20173_low_6
NF20173_low_6
[»] chr3 (17 HSPs)
chr3 (190-270)||(23706999-23707079)
chr3 (190-270)||(23725455-23725535)
chr3 (190-270)||(23743911-23743991)
chr3 (1-78)||(23706780-23706857)
chr3 (1-78)||(23725236-23725313)
chr3 (1-78)||(23743692-23743769)
chr3 (1-78)||(23773237-23773314)
chr3 (216-270)||(23773613-23773667)
chr3 (6-46)||(45393952-45393992)
chr3 (6-59)||(37520543-37520596)
chr3 (1-59)||(13349433-13349491)
chr3 (14-59)||(52266443-52266488)
chr3 (11-43)||(23772607-23772639)
chr3 (14-46)||(31974682-31974714)
chr3 (11-70)||(46150716-46150776)
chr3 (23-70)||(48649172-48649220)
chr3 (23-70)||(48764483-48764531)
[»] chr1 (7 HSPs)
chr1 (1-59)||(4135521-4135579)
chr1 (11-78)||(49680808-49680876)
chr1 (6-43)||(33504109-33504146)
chr1 (1-34)||(22420418-22420451)
chr1 (23-59)||(7406262-7406298)
chr1 (23-78)||(13262830-13262886)
chr1 (11-43)||(49681660-49681692)
[»] chr8 (7 HSPs)
chr8 (6-78)||(38576283-38576356)
chr8 (13-77)||(37025005-37025069)
chr8 (7-57)||(3417377-3417427)
chr8 (1-59)||(31602034-31602092)
chr8 (6-44)||(37025727-37025765)
chr8 (23-60)||(8298264-8298301)
chr8 (14-43)||(38575592-38575621)
[»] chr7 (13 HSPs)
chr7 (6-78)||(25342494-25342567)
chr7 (6-78)||(25343300-25343373)
chr7 (11-78)||(30660590-30660658)
chr7 (11-78)||(37950454-37950522)
chr7 (24-78)||(45161966-45162021)
chr7 (14-78)||(3772516-3772581)
chr7 (14-70)||(18977759-18977816)
chr7 (14-46)||(25343229-25343261)
chr7 (16-78)||(27948443-27948506)
chr7 (6-45)||(40274646-40274685)
chr7 (194-247)||(3044347-3044400)
chr7 (14-43)||(25344036-25344065)
chr7 (6-46)||(43064365-43064405)
[»] chr2 (11 HSPs)
chr2 (6-78)||(1297104-1297177)
chr2 (6-78)||(9275584-9275657)
chr2 (1-59)||(38361085-38361143)
chr2 (14-59)||(1296397-1296442)
chr2 (14-59)||(9276319-9276364)
chr2 (1-42)||(15774237-15774278)
chr2 (6-59)||(29559401-29559454)
chr2 (23-78)||(11750255-11750311)
chr2 (4-78)||(18174649-18174724)
chr2 (14-60)||(24934586-24934632)
chr2 (6-78)||(18174097-18174170)
[»] chr4 (15 HSPs)
chr4 (1-70)||(7842506-7842576)
chr4 (1-46)||(16902911-16902956)
chr4 (14-70)||(53148601-53148658)
chr4 (11-78)||(26147019-26147087)
chr4 (3-46)||(1866374-1866417)
chr4 (3-46)||(7841822-7841865)
chr4 (3-46)||(26279202-26279245)
chr4 (4-78)||(47688459-47688534)
chr4 (6-59)||(12920256-12920309)
chr4 (6-78)||(47687907-47687980)
chr4 (6-78)||(53733713-53733786)
chr4 (23-70)||(20774179-20774227)
chr4 (23-70)||(24158819-24158867)
chr4 (23-70)||(30573708-30573756)
chr4 (198-270)||(54411634-54411706)
[»] scaffold0085 (1 HSPs)
scaffold0085 (1-59)||(15835-15893)
[»] chr6 (8 HSPs)
chr6 (13-78)||(12344891-12344957)
chr6 (23-78)||(8488466-8488522)
chr6 (14-46)||(9365748-9365780)
chr6 (11-59)||(19323000-19323048)
chr6 (11-59)||(19323753-19323801)
chr6 (17-51)||(5861911-5861945)
chr6 (23-78)||(10171964-10172020)
chr6 (23-78)||(26528820-26528876)
[»] scaffold0086 (1 HSPs)
scaffold0086 (14-78)||(8281-8346)
[»] chr5 (8 HSPs)
chr5 (6-78)||(235589-235662)
chr5 (7-46)||(4084910-4084949)
chr5 (4-78)||(17071221-17071296)
chr5 (4-77)||(34600259-34600333)
chr5 (6-78)||(236910-236983)
chr5 (6-78)||(17071775-17071848)
chr5 (6-78)||(34600812-34600885)
chr5 (6-46)||(19193252-19193292)
[»] scaffold0093 (1 HSPs)
scaffold0093 (23-78)||(23727-23783)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 23706999 - 23707079
Alignment:
Q  190 gcacatatgcctccacttattctatcaattctcatgaacaccattcatcttctccaacgcatacattcatatgttcaccct 270  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23706999 gcacatatgccttcccttattctatcaattctcatgaacaccattcatcttctccaacgcatacattcatatgttcaccct 23707079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 23725455 - 23725535
Alignment:
Q  190 gcacatatgcctccacttattctatcaattctcatgaacaccattcatcttctccaacgcatacattcatatgttcaccct 270  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23725455 gcacatatgccttcccttattctatcaattctcatgaacaccattcatcttctccaacgcatacattcatatgttcaccct 23725535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 23743911 - 23743991
Alignment:
Q  190 gcacatatgcctccacttattctatcaattctcatgaacaccattcatcttctccaacgcatacattcatatgttcaccct 270  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23743911 gcacatatgccttcccttattctatcaattctcatgaacaccattcatcttctccaacgcatacattcatatgttcaccct 23743991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 23706780 - 23706857
Alignment:
Q  1 cattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctgtgtcaatggattctaactc 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  23706780 cattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttgacacctgtgtcaacggattctaactc 23706857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 23725236 - 23725313
Alignment:
Q  1 cattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctgtgtcaatggattctaactc 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  23725236 cattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttgacacctgtgtcaacggattctaactc 23725313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 23743692 - 23743769
Alignment:
Q  1 cattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctgtgtcaatggattctaactc 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  23743692 cattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttgacacctgtgtcaacggattctaactc 23743769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 23773237 - 23773314
Alignment:
Q  1 cattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctgtgtcaatggattctaactc 78  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  23773237 cattggattgaataaaattgatggttgtgatttggtgtcaacgaatatgttgacacttgtgtcaacggattctaactc 23773314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 23773613 - 23773667
Alignment:
Q  216 aattctcatgaacaccattcatcttctccaacgcatacattcatatgttcaccct 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23773613 aattctcatgaacaccattcatcttctccaacgcatacattcatatgttcaccct 23773667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 45393952 - 45393992
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaat 46  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  45393952 gattaaataaaattgatggttgagatttggtgtcaacgaat 45393992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 37520543 - 37520596
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctg 59  Q
    |||| ||||| ||||||||||||||||||||||||||||||  ||| |||||||    
T  37520543 gattaaataagattgatggttgagatttggtgtcaacgaattcgttgacacctg 37520596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13349491 - 13349433
Alignment:
Q  1 cattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctg 59  Q
    ||||||||| |||||| | || |||| ||||||||||||||||||| |||| |||||||    
T  13349491 cattggattaaataaattagacggttaagatttggtgtcaacgaatttgttgacacctg 13349433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 52266443 - 52266488
Alignment:
Q  14 aaaattgatggttgagatttggtgtcaacgaatatgttaacacctg 59  Q
    ||||| || ||||||||||||||||||||||||  |||||||||||    
T  52266443 aaaatagacggttgagatttggtgtcaacgaattcgttaacacctg 52266488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 23772639 - 23772607
Alignment:
Q  11 aataaaattgatggttgagatttggtgtcaacg 43  Q
    |||||||| ||||||||||||||||||||||||    
T  23772639 aataaaatagatggttgagatttggtgtcaacg 23772607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 31974714 - 31974682
Alignment:
Q  14 aaaattgatggttgagatttggtgtcaacgaat 46  Q
    ||||| |||||||||||||||||||||||||||    
T  31974714 aaaatagatggttgagatttggtgtcaacgaat 31974682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 46150716 - 46150776
Alignment:
Q  11 aataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggat 70  Q
    ||||||||  ||||||||||||||||||||||||||  ||| |||||| ||||||| ||||    
T  46150716 aataaaataaatggttgagatttggtgtcaacgaatccgttgacacctagtgtcaacggat 46150776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 48649172 - 48649220
Alignment:
Q  23 ggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggat 70  Q
    |||| ||||||||||||||||||| |||| |||||| ||||||||||||    
T  48649172 ggttaagatttggtgtcaacgaatctgttgacacctggtgtcaatggat 48649220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 48764531 - 48764483
Alignment:
Q  23 ggttgagatttggtgtcaacgaatatgttaacacctg-tgtcaatggat 70  Q
    ||||||||||||||||||||||||  ||| ||||||| |||||||||||    
T  48764531 ggttgagatttggtgtcaacgaattcgttgacacctgatgtcaatggat 48764483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 4135521 - 4135579
Alignment:
Q  1 cattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctg 59  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  4135521 cattggattgaataaaattgatggttaagatttggtgtcaacgaatatgttgacacctg 4135579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 49680876 - 49680808
Alignment:
Q  11 aataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||||||||||||| |||||||||||||||||||||  ||| |||||| ||||||| |||| |||||||    
T  49680876 aataaaattgatggatgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactc 49680808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 33504146 - 33504109
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacg 43  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  33504146 gattgaataaaatggatggttgagatttggtgtcaacg 33504109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 22420418 - 22420451
Alignment:
Q  1 cattggattgaataaaattgatggttgagatttg 34  Q
    |||||||||||||||||| |||||||||||||||    
T  22420418 cattggattgaataaaatagatggttgagatttg 22420451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 7406298 - 7406262
Alignment:
Q  23 ggttgagatttggtgtcaacgaatatgttaacacctg 59  Q
    ||||||||||||||||||||||||  |||||||||||    
T  7406298 ggttgagatttggtgtcaacgaattcgttaacacctg 7406262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 13262886 - 13262830
Alignment:
Q  23 ggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    ||||||||||||||||||||||||  ||| |||||| ||||||| |||| |||||||    
T  13262886 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctaactc 13262830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 49681660 - 49681692
Alignment:
Q  11 aataaaattgatggttgagatttggtgtcaacg 43  Q
    |||||||| ||||||||||||||||||||||||    
T  49681660 aataaaatcgatggttgagatttggtgtcaacg 49681692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 38576283 - 38576356
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||| |||||| ||||||| |||| |||||||    
T  38576283 gattaaataaaattgatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactc 38576356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 37025069 - 37025005
Alignment:
Q  13 taaaattgatggttgagatttggtgtcaacgaatatgttaacacctgtgtcaatggattctaact 77  Q
    |||||| ||||||||||||||||||||||||||| |||| ||||  ||||||| |||| ||||||    
T  37025069 taaaatcgatggttgagatttggtgtcaacgaatctgttgacactggtgtcaacggatcctaact 37025005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 3417427 - 3417377
Alignment:
Q  7 attgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacc 57  Q
    |||||||||||| ||||||| |||||||||||||||||||  |||||||||    
T  3417427 attgaataaaatggatggttaagatttggtgtcaacgaattcgttaacacc 3417377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 31602092 - 31602034
Alignment:
Q  1 cattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctg 59  Q
    ||||||||| |||||| | || ||||||||||||||||||||||||  ||| |||||||    
T  31602092 cattggattaaataaattagacggttgagatttggtgtcaacgaattcgttgacacctg 31602034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 37025727 - 37025765
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacga 44  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  37025727 gattaaataaagttgatggttgagatttggtgtcaacga 37025765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 8298301 - 8298264
Alignment:
Q  23 ggttgagatttggtgtcaacgaatatgttaacacctgt 60  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  8298301 ggttgagatttggtgtcaacgaatccgttaacacctgt 8298264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 38575621 - 38575592
Alignment:
Q  14 aaaattgatggttgagatttggtgtcaacg 43  Q
    ||||||||||||||||||||||||||||||    
T  38575621 aaaattgatggttgagatttggtgtcaacg 38575592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 25342567 - 25342494
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||| |||||| ||||||| |||| |||||||    
T  25342567 gattaaataaaattgatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactc 25342494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 25343373 - 25343300
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||| |||||| ||||||| |||| |||||||    
T  25343373 gattaaataaaattgatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactc 25343300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 30660658 - 30660590
Alignment:
Q  11 aataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||||||||||||| |||||||||||||||||||||  ||| |||||| ||||||| |||| |||||||    
T  30660658 aataaaattgatggatgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactc 30660590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 37950454 - 37950522
Alignment:
Q  11 aataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||||||||||||| |||||||||||||||||||||  ||| |||||| ||||||| |||| |||||||    
T  37950454 aataaaattgatggatgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactc 37950522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 45162021 - 45161966
Alignment:
Q  24 gttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||| |||||||    
T  45162021 gttgagatttggtgtcaacgaatccgttaacacctggtgtcaatggatcctaactc 45161966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 3772516 - 3772581
Alignment:
Q  14 aaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    ||||| || ||||||||||||||||||||||||| ||| |||||| ||||||| |||| |||||||    
T  3772516 aaaatagacggttgagatttggtgtcaacgaatacgttgacacctggtgtcaacggatcctaactc 3772581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 18977759 - 18977816
Alignment:
Q  14 aaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggat 70  Q
    ||||||||||||||||||||||||| |||||||  ||| |||||| ||||||||||||    
T  18977759 aaaattgatggttgagatttggtgttaacgaatccgttgacacctggtgtcaatggat 18977816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 25343229 - 25343261
Alignment:
Q  14 aaaattgatggttgagatttggtgtcaacgaat 46  Q
    |||||||||||||||||||||||||||||||||    
T  25343229 aaaattgatggttgagatttggtgtcaacgaat 25343261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 27948506 - 27948443
Alignment:
Q  16 aattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||||| ||||||||||||||||||||||||  ||| |||||| ||||||| |||| |||||||    
T  27948506 aattgaaggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctaactc 27948443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 40274646 - 40274685
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaa 45  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  40274646 gattaaataaaattgatggttgagattcggtgtcaacgaa 40274685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 3044400 - 3044347
Alignment:
Q  194 atatgcctccacttattctatcaattctcatgaacaccattcatcttctccaac 247  Q
    |||||||||| |||||||||||||||||||| |||    |||||||||||||||    
T  3044400 atatgcctccccttattctatcaattctcattaaccttgttcatcttctccaac 3044347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 25344036 - 25344065
Alignment:
Q  14 aaaattgatggttgagatttggtgtcaacg 43  Q
    ||||||||||||||||||||||||||||||    
T  25344036 aaaattgatggttgagatttggtgtcaacg 25344065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 43064405 - 43064365
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaat 46  Q
    ||||||||||||| || |||||||||||| |||||||||||    
T  43064405 gattgaataaaatagacggttgagatttgatgtcaacgaat 43064365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 1297104 - 1297177
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||| |||||| ||||||| |||| |||||||    
T  1297104 gattaaataaaattgatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactc 1297177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 9275657 - 9275584
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||| |||||| ||||||| |||| |||||||    
T  9275657 gattaaataaaattgatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactc 9275584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38361143 - 38361085
Alignment:
Q  1 cattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctg 59  Q
    |||||||||  | |||||||||||||||||||||||||||||||||  ||| |||||||    
T  38361143 cattggattagacaaaattgatggttgagatttggtgtcaacgaattcgttgacacctg 38361085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 1296442 - 1296397
Alignment:
Q  14 aaaattgatggttgagatttggtgtcaacgaatatgttaacacctg 59  Q
    |||||||||||||||||||||||||||||||||  ||| |||||||    
T  1296442 aaaattgatggttgagatttggtgtcaacgaattcgttgacacctg 1296397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 9276319 - 9276364
Alignment:
Q  14 aaaattgatggttgagatttggtgtcaacgaatatgttaacacctg 59  Q
    |||||||||||||||||||||||||||||||||  ||| |||||||    
T  9276319 aaaattgatggttgagatttggtgtcaacgaattcgttgacacctg 9276364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15774278 - 15774237
Alignment:
Q  1 cattggattgaataaaattgatggttgagatttggtgtcaac 42  Q
    ||||| ||| ||||||||||||||||||||||||||||||||    
T  15774278 cattgaattaaataaaattgatggttgagatttggtgtcaac 15774237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 29559401 - 29559454
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctg 59  Q
    ||||||||||||| |||| ||||||||||||||||||||||  ||| |||||||    
T  29559401 gattgaataaaatggatgattgagatttggtgtcaacgaattcgttgacacctg 29559454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 11750311 - 11750255
Alignment:
Q  23 ggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    ||||||||||||||||||||||||  ||| |||||| |||||||||||| |||||||    
T  11750311 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctaactc 11750255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 18174649 - 18174724
Alignment:
Q  4 tggattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctg-tgtcaatggattctaactc 78  Q
    |||||| ||||||||  | ||||||||||||||||||||||||  ||| ||||||| |||||| |||| |||||||    
T  18174649 tggattaaataaaataaacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatcctaactc 18174724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 24934586 - 24934632
Alignment:
Q  14 aaaattgatggttgagatttggtgtcaacgaatatgttaacacctgt 60  Q
    ||||||||||||||||||||||||| |||||||  ||| ||||||||    
T  24934586 aaaattgatggttgagatttggtgttaacgaatccgttgacacctgt 24934632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 18174170 - 18174097
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||| ||||||||  | ||||| ||||||||||||||||||  |||||||||| ||||||| |||| |||||||    
T  18174170 gattaaataaaataaacggttgcgatttggtgtcaacgaattcgttaacacctggtgtcaacggatcctaactc 18174097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7842506 - 7842576
Alignment:
Q  1 cattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctg-tgtcaatggat 70  Q
    ||||||||| ||| |||| |||||||||||||||||||||||||||  ||| ||||||| |||||||||||    
T  7842506 cattggatttaatgaaatagatggttgagatttggtgtcaacgaattcgttgacacctgatgtcaatggat 7842576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16902956 - 16902911
Alignment:
Q  1 cattggattgaataaaattgatggttgagatttggtgtcaacgaat 46  Q
    |||||||||  | |||||||||||||||||||||||||||||||||    
T  16902956 cattggattagacaaaattgatggttgagatttggtgtcaacgaat 16902911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 53148601 - 53148658
Alignment:
Q  14 aaaattgatggttgagatttggtgtcaacgaatatgttaacacctg-tgtcaatggat 70  Q
    ||||| || |||||||||||||||||||||||| |||| ||||||| |||||||||||    
T  53148601 aaaatagacggttgagatttggtgtcaacgaatctgttgacacctgatgtcaatggat 53148658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 26147019 - 26147087
Alignment:
Q  11 aataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||| |||||| ||||||||||||||||||||||||  ||| |||||| ||||||| |||| |||||||    
T  26147019 aatacaattgaaggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctaactc 26147087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 1866417 - 1866374
Alignment:
Q  3 ttggattgaataaaattgatggttgagatttggtgtcaacgaat 46  Q
    ||||||| ||| | ||||||||||||||||||||||||||||||    
T  1866417 ttggattaaatgagattgatggttgagatttggtgtcaacgaat 1866374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 7841865 - 7841822
Alignment:
Q  3 ttggattgaataaaattgatggttgagatttggtgtcaacgaat 46  Q
    ||||||| |||||||| ||| |||||||||||||||||||||||    
T  7841865 ttggatttaataaaatagatagttgagatttggtgtcaacgaat 7841822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 26279245 - 26279202
Alignment:
Q  3 ttggattgaataaaattgatggttgagatttggtgtcaacgaat 46  Q
    ||||||| ||| | ||||||||||||||||||||||||||||||    
T  26279245 ttggattaaatgagattgatggttgagatttggtgtcaacgaat 26279202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 47688459 - 47688534
Alignment:
Q  4 tggattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||||| ||||||||  | ||||||||||||||||||||||||  ||| |||||| ||||||| |||| |||||||    
T  47688459 tggattaaataaaataaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactc 47688534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 12920256 - 12920309
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctg 59  Q
    |||| ||||||||  | |||||||||||||||||||||||| |||||| |||||    
T  12920256 gattaaataaaataaacggttgagatttggtgtcaacgaatctgttaatacctg 12920309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 47687980 - 47687907
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||| ||||||||  | ||||| ||||||||||||||||||  |||||||||| ||||||| |||| |||||||    
T  47687980 gattaaataaaataaacggttgcgatttggtgtcaacgaattcgttaacacctggtgtcaacggatcctaactc 47687907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 53733713 - 53733786
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||| ||| |||| ||||||||| |||||||||||||||||  ||| |||||| |||||||| |||| ||||||    
T  53733713 gattaaatgaaatagatggttgaaatttggtgtcaacgaatccgttgacacctggtgtcaatagattataactc 53733786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 20774179 - 20774227
Alignment:
Q  23 ggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggat 70  Q
    ||||||||||||||||||||||||  ||| |||||| ||||||||||||    
T  20774179 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggat 20774227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 24158819 - 24158867
Alignment:
Q  23 ggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggat 70  Q
    |||| ||||||||||||||||||| |||| |||||| ||||||||||||    
T  24158819 ggttaagatttggtgtcaacgaatctgttgacacctggtgtcaatggat 24158867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 30573708 - 30573756
Alignment:
Q  23 ggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggat 70  Q
    ||||||||||||||||||||||||  ||| |||||| ||||||||||||    
T  30573708 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggat 30573756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 54411706 - 54411634
Alignment:
Q  198 gcctccacttattctatcaattctcatgaacaccattcatcttctccaacgcatacattcatatgttcaccct 270  Q
    |||||| ||||||||||  ||| |||||||| | |||||||||||| ||| ||||| || || ||||||||||    
T  54411706 gcctccccttattctattgattgtcatgaaccctattcatcttctctaactcatacttttatctgttcaccct 54411634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 15835 - 15893
Alignment:
Q  1 cattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctg 59  Q
    |||||||||  | |||||||||||||||||||||||||||||||||  ||| |||||||    
T  15835 cattggattagacaaaattgatggttgagatttggtgtcaacgaattcgttgacacctg 15893  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 12344957 - 12344891
Alignment:
Q  13 taaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||||| || |||||||||||||| ||||||||| |||| |||||| |||||||||||| |||||||    
T  12344957 taaaatagacggttgagatttggtatcaacgaatctgttgacacctggtgtcaatggatcctaactc 12344891  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 8488522 - 8488466
Alignment:
Q  23 ggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    ||||||||||||||||||||||||  ||| |||||| |||||||||||| |||||||    
T  8488522 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctaactc 8488466  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 9365780 - 9365748
Alignment:
Q  14 aaaattgatggttgagatttggtgtcaacgaat 46  Q
    |||||||||||||||||||||||||||||||||    
T  9365780 aaaattgatggttgagatttggtgtcaacgaat 9365748  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 19323048 - 19323000
Alignment:
Q  11 aataaaattgatggttgagatttggtgtcaacgaatatgttaacacctg 59  Q
    |||||||||||||| |||||||||||||||||||||  ||| |||||||    
T  19323048 aataaaattgatggatgagatttggtgtcaacgaatccgttgacacctg 19323000  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 19323753 - 19323801
Alignment:
Q  11 aataaaattgatggttgagatttggtgtcaacgaatatgttaacacctg 59  Q
    |||||||| |||||||||||||||||||||||||||  ||| |||||||    
T  19323753 aataaaatcgatggttgagatttggtgtcaacgaattcgttgacacctg 19323801  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 5861945 - 5861911
Alignment:
Q  17 attgatggttgagatttggtgtcaacgaatatgtt 51  Q
    |||||||||||||||||||||||||||||| ||||    
T  5861945 attgatggttgagatttggtgtcaacgaatctgtt 5861911  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 10171964 - 10172020
Alignment:
Q  23 ggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    ||||||||||||||||||||||||  ||| |||||| ||||||| |||| |||||||    
T  10171964 ggttgagatttggtgtcaacgaatgcgttgacacctggtgtcaacggatcctaactc 10172020  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 26528876 - 26528820
Alignment:
Q  23 ggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    ||||||||||||||||||||||||  ||| |||||| ||||||| |||| |||||||    
T  26528876 ggttgagatttggtgtcaacgaatgcgttgacacctggtgtcaacggatcctaactc 26528820  T

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Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 8281 - 8346
Alignment:
Q  14 aaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    ||||| || |||||||||||||||| |||||||| ||| |||||| |||||||||||| |||||||    
T  8281 aaaatagacggttgagatttggtgttaacgaatacgttgacacctggtgtcaatggatcctaactc 8346  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 235662 - 235589
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||| ||| |||| || ||||||||||||||||||||||||  ||| |||||| |||||||||||| |||||||    
T  235662 gattaaatgaaatagacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctaactc 235589  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 4084949 - 4084910
Alignment:
Q  7 attgaataaaattgatggttgagatttggtgtcaacgaat 46  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  4084949 attgaataaaatgaatggttgagatttggtgtcaacgaat 4084910  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 17071296 - 17071221
Alignment:
Q  4 tggattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctg-tgtcaatggattctaactc 78  Q
    |||||| ||||||||  | ||||||||||||||||||||||||  ||| ||||||| |||||| |||| |||||||    
T  17071296 tggattaaataaaataaacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatcctaactc 17071221  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 34600333 - 34600259
Alignment:
Q  4 tggattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacctg-tgtcaatggattctaact 77  Q
    |||||| ||||||||  | ||||||||||||||||||||||||  ||| ||||||| |||||| |||| ||||||    
T  34600333 tggattaaataaaataaacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatcctaact 34600259  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 236910 - 236983
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||| ||| |||| || ||||||||||||||||| ||||||  ||| |||||| |||||||||||| |||||||    
T  236910 gattaaatgaaatagacggttgagatttggtgtctacgaatccgttgacacctggtgtcaatggatcctaactc 236983  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 17071775 - 17071848
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||| ||||||||  | ||||| ||||||||||||||||||  |||||||||| ||||||| |||| |||||||    
T  17071775 gattaaataaaataaacggttgcgatttggtgtcaacgaattcgttaacacctggtgtcaacggatcctaactc 17071848  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 34600812 - 34600885
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    |||| ||||||||  | ||||| ||||||||||||||||||  |||||||||| ||||||| |||| |||||||    
T  34600812 gattaaataaaataaacggttgcgatttggtgtcaacgaattcgttaacacctggtgtcaagggatcctaactc 34600885  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 19193252 - 19193292
Alignment:
Q  6 gattgaataaaattgatggttgagatttggtgtcaacgaat 46  Q
    |||| |||||||| ||||||||||||||||||||| |||||    
T  19193252 gattaaataaaatcgatggttgagatttggtgtcagcgaat 19193292  T

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Target: scaffold0093 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 23727 - 23783
Alignment:
Q  23 ggttgagatttggtgtcaacgaatatgttaacacct-gtgtcaatggattctaactc 78  Q
    ||||||||||||||||||||||||  ||| ||| || |||||||||||| |||||||    
T  23727 ggttgagatttggtgtcaacgaatccgttgacaactggtgtcaatggatcctaactc 23783  T

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