View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20173_low_7 (Length: 278)
Name: NF20173_low_7
Description: NF20173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20173_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 46998140 - 46998410
Alignment:
| Q |
1 |
tgtggtggtcaaagaatgaatgacccataggtggcacatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctcc |
100 |
Q |
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| T |
46998140 |
tgtggtggtcaaagaatgaatgaacaataggtggcacatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctcc |
46998239 |
T |
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| Q |
101 |
aagactgtttttgcaatcgacaaaaacagtgtaaaaatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtg |
200 |
Q |
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| T |
46998240 |
gagactgtttttgcaatcaacaaaaacagtgtaaaaatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtg |
46998339 |
T |
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| Q |
201 |
agggaaagggagtgtttcagtttctctaccaagttctctatgaaatgttgtttgtttagtgatgatgatgt |
271 |
Q |
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| T |
46998340 |
agggaaagggagtgtttcagtttctctaccaagttctctatgaaatgttgtttgtttagtgatgatgatgt |
46998410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 46981072 - 46981334
Alignment:
| Q |
9 |
tcaaagaatgaatgacccataggtggcacatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctccaagactgt |
108 |
Q |
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| T |
46981072 |
tcaaagaacgaatggacaatgggtgggacatcaatgggggtgaggatatcatttatggtgatatctaaagttgcatgaataaatttagctccgggactgt |
46981171 |
T |
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| Q |
109 |
ttttgcaatcgacaaaaacagtgtaaaaatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtgagggaaag |
208 |
Q |
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| T |
46981172 |
ttttgcaatcgacgaaaacagtgtaagaatcaggatcttcggattttttagtaacaagacgacctgagaggggatagaaatggaaaagcgtgagggaaag |
46981271 |
T |
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| Q |
209 |
ggagtgtttcagtttctctaccaagttctctatgaaatgttgtttgtttagtgatgatgatgt |
271 |
Q |
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| T |
46981272 |
ggagtgtttcagtttctccaccaggttctctatgaaatgttgttggtttagtgatgatgatgt |
46981334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 46995892 - 46996114
Alignment:
| Q |
1 |
tgtggtggtcaaagaatgaatgacccataggtggcacatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctcc |
100 |
Q |
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|||| |||||||||||||||||| | || ||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46995892 |
tgtgatggtcaaagaatgaatgaacaatgggtgggacatcaattggtgagagaatatcattgatggtaatatctaaagttgcatgaataaatttagctcc |
46995991 |
T |
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| Q |
101 |
aagactgtttttgcaatcgacaaaaacagtgtaaaaatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtg |
200 |
Q |
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| T |
46995992 |
gagactgtttttgcaatcgacaaaaacagtgtaagaatgaggatcttcggattttttagtaacaagacgacctgagaggggatagaaatggaaaagtgtg |
46996091 |
T |
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| Q |
201 |
agggaaagggagtgtttcagttt |
223 |
Q |
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| T |
46996092 |
agggaaagggagtgtttgagttt |
46996114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 30 - 267
Target Start/End: Original strand, 46975106 - 46975343
Alignment:
| Q |
30 |
ggtggcacatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctccaagactgtttttgcaatcgacaaaaacag |
129 |
Q |
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||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || ||||||| |
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| T |
46975106 |
ggtgggacatcaactggtgagagaatatcatttatggtgatatctaaagttgcatgaataaatctagctccgcgactgtttttgcaatcaacgaaaacag |
46975205 |
T |
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| Q |
130 |
tgtaaaaatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtgagggaaagggagtgtttcagtttctctac |
229 |
Q |
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||||| |||||||||||||||||||||||||||||||||| || || ||||||| |||| ||||||||||| ||||| |||||||| ||||| || || |
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| T |
46975206 |
tgtaagaatgagggtcttcagattttttagtaacaagacgaccagacaggggataataatgaaaaagtgtgagagaaagagagtgtttgagtttgtccac |
46975305 |
T |
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| Q |
230 |
caagttctctatgaaatgttgtttgtttagtgatgatg |
267 |
Q |
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| T |
46975306 |
taggttctcaatgaagtgttgttggtttagtgatgatg |
46975343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 47001832 - 47001998
Alignment:
| Q |
1 |
tgtggtggtcaaagaatgaatgacccataggtggcacatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctcc |
100 |
Q |
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|||||||||||||||| || | | | || ||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
47001832 |
tgtggtggtcaaagaacgatttaactatgggtgggacatcaacaggtgagagaataacattgacggtgatatctaaagttgcaagaataaatttagctcc |
47001931 |
T |
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| Q |
101 |
aagactgtttttgcaatcgacaaaaacagtgtaaaaatgagggtcttcagattttttagtaacaaga |
167 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |
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| T |
47001932 |
tcgactgtttttgcaatcgacaaaaacagtgtaagaatgaggatcttcagatttttgagtaacaaga |
47001998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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