View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20173_low_9 (Length: 254)
Name: NF20173_low_9
Description: NF20173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20173_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 8479135 - 8479356
Alignment:
| Q |
15 |
gacacatcaggatatcaattccactgaggaatttgtagctttggaggccaccttacaacacaatgaggctgaagaacaaagtacaaatgagggaaatatt |
114 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8479135 |
gacacatcaggatatcaattccactcacgaatttgtagctttggaggccaccttacaacacaatgaggctgaagaacacagtacaaatgagggaaatatt |
8479234 |
T |
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| Q |
115 |
agtttgatgcaagcagcaccagttcaacaaaaagaaattaccgaggtaaatgttgaaaatgttaatgatgttattccggtttctcaagatgaagtgcaga |
214 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8479235 |
agtttgattcaagcagcaccagttcagcaaaaagaaattacggaggtaaatgttgaaaatgttaatgatgttattccggtttctcaagatgaagtgcaga |
8479334 |
T |
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| Q |
215 |
cagacttgcagatggacaaagc |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
8479335 |
cagacttgcagatggacaaagc |
8479356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 19937060 - 19936844
Alignment:
| Q |
20 |
atcaggatatcaattccactgaggaatttgtagctttggaggccaccttacaacacaatgaggctgaagaacaaagtacaaatgagggaaatattagttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19937060 |
atcaggatatcaattccactgaggaatttgtagctttggaggccactttacaacccaatgaggctgaagaacaaagtacaaatgagggaaatattagttt |
19936961 |
T |
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| Q |
120 |
gatgcaagcagcaccagttcaacaaaaagaaattaccgaggtaaatgttgaaaatgttaatgatgttattccggtttctcaagatgaagtgcagacagac |
219 |
Q |
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| T |
19936960 |
gatgcaagcagcaccagttcagcaaaaagaaattacggaggtaaatgttgaaaatgttaatgatgttattccagtttctcaagatgaagtgcagacagac |
19936861 |
T |
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| Q |
220 |
ttgcagatggacaaagc |
236 |
Q |
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| T |
19936860 |
ttgcagatggacaaagc |
19936844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 41067649 - 41067728
Alignment:
| Q |
157 |
gaggtaaatgttgaaaatgttaatgatgttattccggtttctcaagatgaagtgcagacagacttgcagatggacaaagc |
236 |
Q |
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| T |
41067649 |
gaggtaaatgttgaaaatgttaatgatgttattccggtttctcaagatgaagtgcagacagacttgcagatggacaaagc |
41067728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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