View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_high_1 (Length: 732)
Name: NF20174_high_1
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 177 - 717
Target Start/End: Complemental strand, 35121337 - 35120800
Alignment:
| Q |
177 |
acattttccaaccgagtgcagaaatatatgaaaggaacattaaaagggtacatgacttgttcggtcaaagaaaaagagaacatttgtattttacaatata |
276 |
Q |
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| T |
35121337 |
acattttccaaccgagtgcagaaatatatgaaaggaacattaaaagggtacatgacttgttcggtcaaagaaaaagagaacatttgtattttacaatata |
35121238 |
T |
|
| Q |
277 |
agnnnnnnnnnnnnngacaaaacaatagtataagttaattattcattaactaaatgataatttttagtcaaactaatataatataatgacagaattttat |
376 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35121237 |
agttttttgttttttgacaaaacaata---taagttaattattcattaactaaatgataatttttagtcaaactaatataatataatgacagaattttat |
35121141 |
T |
|
| Q |
377 |
acctctttcctgttacctttttaattatacatctgannnnnnnngctgttaattaacaaaagttaattaaaagaacaatagcataagtcagatattttga |
476 |
Q |
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| T |
35121140 |
acctctttcctgttacctttttaattatacatccgattttttttgctgttaattaacaaaagttaattgaaagaacaatagcataagtcagatattttga |
35121041 |
T |
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| Q |
477 |
tatgatcgagtataacatattagattctatttaatatataagtgcataagagataaattgtgttagcatctggcaagaaaaaatcaatatttctgaaaag |
576 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
35121040 |
tatgatcgagtataacatattagattctatttaatatataagtgcataagagataaattctgttagcatctggtaagaaaaaatcaatatttctgaaaag |
35120941 |
T |
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| Q |
577 |
gttatgacgtgtatatatatctctagcttttgtttaaatcattgttctttaaaaataatacagtatacaattatttccgtttgagctaagtctgtctctt |
676 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35120940 |
gttatgacgtgtatatatatctctagcttttgtttaaatcattgttctttaaaaataatacagtatacaattatttccgtttgagctaagtctgtctctt |
35120841 |
T |
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| Q |
677 |
ttatatattttaagtttgttttggaatgttaggatgttttt |
717 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
35120840 |
ttatatattttaagtttgttttggaatgttaggatgttttt |
35120800 |
T |
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