View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20174_high_11 (Length: 426)

Name: NF20174_high_11
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20174_high_11
NF20174_high_11
[»] chr4 (13 HSPs)
chr4 (14-408)||(35252606-35252999)
chr4 (14-408)||(35240354-35240748)
chr4 (14-223)||(35245818-35246027)
chr4 (260-408)||(35246229-35246374)
chr4 (252-408)||(35286411-35286565)
chr4 (336-408)||(35270789-35270861)
chr4 (292-408)||(35277398-35277514)
chr4 (162-230)||(35270037-35270105)
chr4 (165-230)||(35277094-35277159)
chr4 (15-56)||(35285852-35285893)
chr4 (30-74)||(35269914-35269958)
chr4 (162-205)||(35274830-35274873)
chr4 (165-230)||(35282681-35282746)


Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 35252606 - 35252999
Alignment:
Q  14 cagagacattaactagaacttcatttccatatcttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtc 113  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35252606 cagagacatttactagaacttcatttccatatcttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtc 35252705  T
Q  114 cagtaattaatacatcagaggcacctcctttattacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattattt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35252706 cagtaattaatacatcagaggcacctcctttattacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattattt 35252805  T
Q  214 acttactatttatgcaaccacctcgtatacttttatagttttaataggttcaactatgactgagtctaactgtataacctctgtaacatttacttaaaca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35252806 acttactatttatgcaaccacctcgtatacttttatagttttaataggttcaactatgactgagtctaactgtataacctctgtaacatttactt-aaca 35252904  T
Q  314 gagatatagatgggactcaatgatcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatgg 408  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  35252905 gagatatagatgggacttaatgatcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaagacgttagggtatcgaggatgg 35252999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 35240354 - 35240748
Alignment:
Q  14 cagagacattaactagaacttcatttccatatcttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  35240354 cagagacattaactagaacttcatttccatatcttcaccacagaattactgctagctgatgcaatatcgaattcacttcgcgctgtagtagctgctagtc 35240453  T
Q  114 cagtaattaatacatcagaggcacctcctttattacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattattt 213  Q
    ||||||||||||||||||||||| |||||||| ||||| ||| |   ||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  35240454 cagtaattaatacatcagaggcatctcctttagtacgtatttccctggtctcaacagtcaacaattccaagcactgcaataagttgtccacagattattt 35240553  T
Q  214 acttactatttatgcaaccacctcgtatacttttatagttttaataggttcaactatgactgagtctaactgtataacctctgtaacatttacttaaaca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||     
T  35240554 acttactatttatgcaaccacctcgtatacttttatagttttaataggttcaactatgactgagtctaactg--taacctctgtaacatttacttaaacg 35240651  T
Q  314 gagatatagatgggactcaatgatc--ataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatgg 408  Q
    |||||||||||||||| |||  |||  |||||||||||  ||||||| ||||||||||||||||||||||||||| || | ||| ||||||||||||    
T  35240652 gagatatagatgggacacaacaatcatataatagaagcagagggaagagtttacctgaaaaccagcaacaactaagacgtcaggatatcgaggatgg 35240748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 35245818 - 35246027
Alignment:
Q  14 cagagacattaactagaacttcatttccatatcttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtc 113  Q
    |||||||||||||||||| |||||||||||| |||||||| ||||||| ||||||| |||||||||| |||||||||| ||||||| | |||||||||||    
T  35245818 cagagacattaactagaatttcatttccatagcttcaccatagaatcagtgctagcggatgcaatatggaattcactttgcgccgttgaagctgctagtc 35245917  T
Q  114 cagtaattaatacatcagaggcacctcctttattacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattattt 213  Q
    |||||||| ||| ||||||||||| ||||||||||  ||||| | |  |||||| ||||||| ||||||||||||||||||||||||||  |||||||||    
T  35245918 cagtaattgatatatcagaggcacttcctttattaaatctttgcccgttctcaataatcaaccattccaagcactgcaataagttgtccgaagattattt 35246017  T
Q  214 acttactatt 223  Q
    ||||| ||||    
T  35246018 acttaatatt 35246027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 260 - 408
Target Start/End: Original strand, 35246229 - 35246374
Alignment:
Q  260 ggttcaactatgactgagtctaactgtataacctctgtaacatttacttaaacagagatatagatgggactcaatgatcataatagaagcgcagggaagt 359  Q
    ||||||||||||||||||||||| ||||  |||||||||||| |||||||||  ||||||||||||| || ||  ||||||||||| |||  ||| ||||    
T  35246229 ggttcaactatgactgagtctaagtgta--acctctgtaacagttacttaaatggagatatagatggcacacac-gatcataatagtagcagaggaaagt 35246325  T
Q  360 gtttacctgaaaaccagcaacaactaacacattagggtatcgaggatgg 408  Q
     ||||||||||||||| ||| |||||| ||   ||||||||||||||||    
T  35246326 atttacctgaaaaccaccaataactaagacgccagggtatcgaggatgg 35246374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 408
Target Start/End: Original strand, 35286411 - 35286565
Alignment:
Q  252 ttttaataggttcaactatgactgagtctaactgtataacctctgtaacatttacttaaacagagatatagatgggactcaatgatcataatagaagcgc 351  Q
    |||||| ||||||||||||||||||| |||| ||||  ||||| |||||| |||| ||||   | ||||| | |  || | |||| |||||| ||||| |    
T  35286411 ttttaaaaggttcaactatgactgaggctaaatgta--acctcagtaacagttacataaaagtatatataaaagaaacaccatgaacataatggaagcac 35286508  T
Q  352 agggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatgg 408  Q
    ||||||| |||||||||||||||| |||||||||| || ||| ||||||||||||||    
T  35286509 agggaagagtttacctgaaaaccaccaacaactaagacgttacggtatcgaggatgg 35286565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 408
Target Start/End: Original strand, 35270789 - 35270861
Alignment:
Q  336 atcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatgg 408  Q
    |||||||| |||||| |||||||||||||||||||||| | ||| |||||| || ||||||||||||||||||    
T  35270789 atcataatggaagcggagggaagtgtttacctgaaaacaaccaataactaagacgttagggtatcgaggatgg 35270861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 408
Target Start/End: Original strand, 35277398 - 35277514
Alignment:
Q  292 ctctgtaacatttacttaaacagagatatagatgggactcaatgatcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacat 391  Q
    |||| ||||| | |||||||  |||||||||| | ||| | ||||||||||| |||||  ||||||| |||||||||||||||  |||||||||| ||||    
T  35277398 ctctataacagtcacttaaaaggagatatagaagagacactatgatcataatggaagcagagggaagagtttacctgaaaaccgccaacaactaagacat 35277497  T
Q  392 tagggtatcgaggatgg 408  Q
    || ||||| ||||||||    
T  35277498 tacggtattgaggatgg 35277514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 35270037 - 35270105
Alignment:
Q  162 tctcaagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaa 230  Q
    ||||||||||||||||||||| |||||| ||||| |||| |||| ||||||||||| || |||||||||    
T  35270037 tctcaagaatcaacaattccaggcactgtaataaattgtacacatattatttactttctctttatgcaa 35270105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 35277094 - 35277159
Alignment:
Q  165 caagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaa 230  Q
    ||||| |||||||||||| || ||||||||| |||| |||||||||||||||| | || |||||||    
T  35277094 caagagtcaacaattccatgccctgcaataaattgtacacagattatttactttccatctatgcaa 35277159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 35285852 - 35285893
Alignment:
Q  15 agagacattaactagaacttcatttccatatcttcaccacag 56  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  35285852 agagacatcaactagaacttcatttccatatgttcaccacag 35285893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 35269914 - 35269958
Alignment:
Q  30 aacttcatttccatatcttcaccacagaatcactgctagctgatg 74  Q
    |||||||| |||||||||||||||||||||||  |||||||||||    
T  35269914 aacttcatctccatatcttcaccacagaatcatcgctagctgatg 35269958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 35274830 - 35274873
Alignment:
Q  162 tctcaagaatcaacaattccaagcactgcaataagttgtccaca 205  Q
    ||||||||||||||| |||||||||||||||||| |||| ||||    
T  35274830 tctcaagaatcaacatttccaagcactgcaataaattgtacaca 35274873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 35282681 - 35282746
Alignment:
Q  165 caagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaa 230  Q
    ||||| || ||||||||| |||||||||||| |||| ||||||||| || ||| | ||||||||||    
T  35282681 caagagtccacaattccatgcactgcaataaattgtacacagattagttgctttccatttatgcaa 35282746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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