View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_high_14 (Length: 403)
Name: NF20174_high_14
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 383
Target Start/End: Complemental strand, 7324221 - 7323854
Alignment:
| Q |
16 |
atcctagggaaagcgatagttaggaaagcaattcatatccctaaagaaatttaaggacaaaaaggacagaatcgtgtcaaaccaaacaacaataacatgt |
115 |
Q |
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| T |
7324221 |
atcctagggaaagcgatagttaggaaagaaattcatatccctaaagaaatctaaagacaaaaaggacggaattgtgtcaaaccaaacaacaataacatgt |
7324122 |
T |
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| Q |
116 |
cctgccggctacccgaatattccatcattttggaggtgatggagtggaccctgagaacgagttaggtatgccaccttaacttcttttttcttctatgcct |
215 |
Q |
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| T |
7324121 |
cctgccggctccccgaatattccatcatttgggaggtgatggagtggaccctgagaacgagttaggtatgccaccttaacttcttttttcttctgtgcct |
7324022 |
T |
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| Q |
216 |
tcgtgaaataaggagtgaataatggaacttttgttgaggaagtgttagctaataaatctttcaccaaattcatttccttttgtaatcctggattaactgg |
315 |
Q |
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| T |
7324021 |
tcgtgaaataaggagtgaataatggaacttccgttgaggcagtgttagctaataaatctttcaccaaatttaattccttttgtaatcctggatcaatcgg |
7323922 |
T |
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| Q |
316 |
gtcgtcaggaccaaccataatcttctgaatagctggcataaagtcagaagacttaactttgacaattg |
383 |
Q |
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| T |
7323921 |
gtcgtcaggaccaaccataatcttctgaatatctgacttaaagtcagaatacttaaatttgacaattg |
7323854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 163 - 327
Target Start/End: Original strand, 8612977 - 8613138
Alignment:
| Q |
163 |
accctgagaacgagttaggtatgccaccttaacttcttttttcttctatgccttcgtgaaataaggagtgaataatggaacttttgttgaggaagtgtta |
262 |
Q |
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| T |
8612977 |
acccttagaacgggttaggtatgtcgccttaactacttttttcttctgtgccttcgtcaaat--ggagagta-aatggaacttctattgtggcactattc |
8613073 |
T |
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| Q |
263 |
gctaataaatctttcaccaaattcatttccttttgtaatcctggattaactgggtcgtcaggacc |
327 |
Q |
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| T |
8613074 |
gctaataaatctttcaccaaattcatttccttttgtaataccggatccattgggtcgttaggacc |
8613138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 156 - 351
Target Start/End: Complemental strand, 27095578 - 27095386
Alignment:
| Q |
156 |
ggagtggaccctgagaacgagttaggtatgccaccttaacttcttttttcttctatgccttcgtgaaataaggagtgaataatggaacttttgttgagga |
255 |
Q |
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| T |
27095578 |
ggagcggacccttagaacgggttaggtatgctgccttaaccacttttttcttctgtgcattcgtcagatagggagtaaat---ggaacttctgttgtggc |
27095482 |
T |
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| Q |
256 |
agtgttagctaataaatctttcaccaaattcatttccttttgtaatcctggattaactgggtcgtcaggaccaaccataatcttctgaatagctgg |
351 |
Q |
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| T |
27095481 |
actgttcgctaataaatctttcaccaaattcattttcttttgtaatatcggatccactgggtcgtcaggacctaccattatcttttgaatatctgg |
27095386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 27095711 - 27095631
Alignment:
| Q |
23 |
ggaaagcgatagttaggaaagcaattcatatccctaaagaaatttaaggacaaaaaggacagaatcgtgtcaaaccaaaca |
103 |
Q |
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| T |
27095711 |
ggaaaacgatagttaggcaagctattcatgtccctcaagaaatctaaagacaaaaaagacggcattgtgtcaaaccaaaca |
27095631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 198 - 365
Target Start/End: Complemental strand, 10177914 - 10177749
Alignment:
| Q |
198 |
cttttttcttctatgccttcgtgaaataaggagtgaataatggaacttttgttgaggaagtgttagctaataaatctttcaccaaattcatttccttttg |
297 |
Q |
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| T |
10177914 |
cttttttcttttgtgccttcgtcaaatagggagtgagt---ggaacatctactgaggcactgttagctaataaatctttcaccaaattcatttccctctg |
10177818 |
T |
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| Q |
298 |
taatcctggattaactgggtcgtcaggaccaaccataatcttctgaata-gctggcataaagtcagaag |
365 |
Q |
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| T |
10177817 |
taatattggatccatcgggtcgtcaagaccagccataatcttttgaatatcctggcataaagtcagaag |
10177749 |
T |
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