View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_high_16 (Length: 391)
Name: NF20174_high_16
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Original strand, 38055921 - 38056290
Alignment:
| Q |
11 |
cataggcctttcaaaattgcacaaatttaagccttcaatcccagggctagtctccctttctgtgagttgataataataaattaaaatcatggtttacttt |
110 |
Q |
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| T |
38055921 |
cataggcctttcaaaattgcacaaatttaagccttcaatcccagggctagtctccctttctgtgagttgataataataaattaaaatcatggtttacttt |
38056020 |
T |
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| Q |
111 |
gtcttcatatcctaaccaaatctataattgaaagagtatactatacaatacagccactatgataaagacaagggtagcttaaggtcaatatcaaacaaga |
210 |
Q |
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| T |
38056021 |
gtcttcatatcctaaccaaatctataattgaaagagtatactatacaatacagccactatgataaagacaagggtagtttaaggtcaatatcaaacaaga |
38056120 |
T |
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| Q |
211 |
aaatttgattttctccgttttgatccacccctaaaaaggaaaattttctattaatgaccaaaatatcactgttgttaggtaagctaccaaaataatacag |
310 |
Q |
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| T |
38056121 |
aaatttgattttctccgttttgatccacccctaaaaaggaaaaatttctattaatgaccaaaatatcactgttgttaggtaagctaccaaaataatacag |
38056220 |
T |
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| Q |
311 |
gattacatgagaaa--ttttgtcttgtttgacaaaaggcgcaaaatcggatatgctaatatcataatatt |
378 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38056221 |
gattacatgagaaaattttcgtcttgtttgacaaaaggcgcaaaatcggatatgctaatatcataatatt |
38056290 |
T |
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