View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_high_17 (Length: 365)
Name: NF20174_high_17
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 328
Target Start/End: Complemental strand, 2501023 - 2500709
Alignment:
| Q |
13 |
cagagttgtgtaagtgagtttcgttggtgcgttcatccatttggatattgtaatttgnnnnnnnngagaatattcttgatatatgcttcaatttcaaaag |
112 |
Q |
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| T |
2501023 |
cagagttgtgtaagtgagtttcgttggtgcgttcatccattgggatattgtaatttgttttttttgagaatattct-gatatatgcttcaatttcaaaag |
2500925 |
T |
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| Q |
113 |
aaatttaaaaatatttatatggatatatatatgtgattcgtgaagaagattgcatgcagatgtctgttgatcatgtattggatcctgaatgagtcaaaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2500924 |
aaatttaaaaatatttatatggatatatatatgtgattcgtgaagaagattgcatgcagatgtctgttgatcatgtattggatcctgaatgagtcaaaac |
2500825 |
T |
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| Q |
213 |
taggtacttgttagtgggtgtgcaaaaaggcacctgcacttaagggacatgtatatagtggcaccatgactcataatgcatgattagtttttcacaagaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2500824 |
taggtacttgttagtgggtgtgcaaaaaggcacctgcacttaagggacatgtatatagtggcaccatgactcataatgcatgattagtttttcacaagaa |
2500725 |
T |
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| Q |
313 |
aaaaggtactgtcacg |
328 |
Q |
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|||||||||||||||| |
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| T |
2500724 |
aaaaggtactgtcacg |
2500709 |
T |
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