View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_high_18 (Length: 365)
Name: NF20174_high_18
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 26 - 349
Target Start/End: Complemental strand, 13673207 - 13672884
Alignment:
| Q |
26 |
ggtgctactaaaagtacctcggcttcataattatcattgagtaatatgtttgaggctttgatgtccctgtgaatgattcgtctgggacaatcttcatgaa |
125 |
Q |
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| T |
13673207 |
ggtgctactaaaagtacctcggcttcataattatcattgagtaatatgtttgaggctttgatatccctgtgaatgattcgtctgggacaatcttcatgga |
13673108 |
T |
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| Q |
126 |
gataatgcaacccctcggctactccgataaccaccttgtaccttgtcttccactctaagcattcagaacctaacaggttgaacataattgtgttacctat |
225 |
Q |
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| T |
13673107 |
gataatgcaacccctcggctactccgataaccaccttgtaccttgtcttccactctaagcattcagaacctaacaggttgaatataattgtgttacctat |
13673008 |
T |
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| Q |
226 |
atcaatgctaatataaaataacaagggatagaaaatggagaagtaagatggaagcagcgctgcgcaccaaataacaaagaagaaagacttccatatggtg |
325 |
Q |
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| T |
13673007 |
atcaatgctaatataaaataacaagggatagaaaatggagaagtaagatggaagcagcgctgcgcaccaaataacaaagaagaaagacttccatatggtg |
13672908 |
T |
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| Q |
326 |
ctaattgtaggacaaagtagaggc |
349 |
Q |
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| T |
13672907 |
ctaattgtaggacaaagtagaggc |
13672884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 39 - 196
Target Start/End: Complemental strand, 28532201 - 28532044
Alignment:
| Q |
39 |
gtacctcggcttcataattatcattgagtaatatgtttgaggctttgatgtccctgtgaatgattcgtctgggacaatcttcatgaagataatgcaaccc |
138 |
Q |
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||||||| ||||||| || || ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| ||| ||||| ||||| || |
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| T |
28532201 |
gtacctctgcttcatcatcattgttgagtaatatgtttgaggctttgatgtctctgtgaatgattcttcttggacaatcttgatggagatattgcaaacc |
28532102 |
T |
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| Q |
139 |
ctcggctactccgataaccaccttgtaccttgtcttccactctaagcattcagaacct |
196 |
Q |
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| T |
28532101 |
tttggctaccccaactgctaccttgaaccttatattccacgccaaacattcagaacct |
28532044 |
T |
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