View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_high_2 (Length: 641)
Name: NF20174_high_2
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 555; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 16 - 626
Target Start/End: Complemental strand, 49256802 - 49256187
Alignment:
| Q |
16 |
aattcaaaccagaaacccaatataacagcaattggaattccaaaaacataataggctccaaggttcacatatgctcccaacttctgccaaccacatcctc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49256802 |
aattcaaaccagaaacccaatataacagcaattggaattccaaaaacataataggctccaaggttcacatatgctcccaatttctgccaaccacatcctc |
49256703 |
T |
|
| Q |
116 |
tagcaatacctataatagacaagtgttacattccatgtcataattcattcaggtaccatgaatttcatgnnnnnnntgaattattgtgcattgaattata |
215 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49256702 |
tagcaatacctataatagacaggtgttacattccatgtcataattcattcaggtaccatgaatttcatgaaaaaaatgaattattgtgcattgaattata |
49256603 |
T |
|
| Q |
216 |
gtaaaaagaaataaagagccaacctgaaagggtaccatgtaaactatctactataacagatagacttat-----gagccatatctgtgacataatccacc |
310 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49256602 |
gaaaaaagaaataaagagccaacctgaaagggtaccatgtaaactatctactataacagatagacttattagaggagccatatctgtgacataatccacc |
49256503 |
T |
|
| Q |
311 |
acatcctgctcattgctaaatatataacctaacacccgtcgagaggcgaaaatgatgaaactcaccaatatagcctcagaaactgcgatagccatagcag |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49256502 |
acatcctgctcattgctaaatatataacctaacacccgtcgagaggcgaaaatgatggaactcaccaatatagcctcagaaactgcgatagccatagcag |
49256403 |
T |
|
| Q |
411 |
catagacagacaatcgtgctgcgtgtggacatccagctcctaatgcatttgaaactcttgcactgaataacacaacgaaaagaaaaaccaaacacaaaca |
510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49256402 |
catagacagacaatcgtgctgcgtgtggacatccagctcctaatgcatttgaaactcttgcactgaatgacacaacgaaaagaaaaaccaaacacaaaca |
49256303 |
T |
|
| Q |
511 |
aagaaatagcatcactttttatttgtacagaaaaatgtgtatgcacaaattgaatgggttttgaatgatgtgaatcaaaaccttgctgctgagccagttg |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49256302 |
aagaaatagcatcactttttatttgtacagaaaaatgtgtatgcacaaattgaatgggttttgaatgatgtgaatcaaaaccttgctgctgagccagttg |
49256203 |
T |
|
| Q |
611 |
cttctggtattgtata |
626 |
Q |
| |
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|||||||||||||||| |
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| T |
49256202 |
cttctggtattgtata |
49256187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 468
Target Start/End: Complemental strand, 49269759 - 49269303
Alignment:
| Q |
19 |
tcaaaccagaaacccaatataacagcaattggaattccaaaaacataataggctccaaggttcacatatgctcccaacttctgccaaccacatcctctag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49269759 |
tcaaaccagaaacccaatataacagcaattggaattccaaaaacatagtaggctccaaggttcacatatgctcccaacttctgccaaccagatcctctag |
49269660 |
T |
|
| Q |
119 |
caatacct----------ataatagacaagtgttacattccatgtcataattcattcaggtaccatgaatttcatgnnnnnnntgaattattgtgcattg |
208 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||||||||||||| | | | || || ||| |||| |||||||||||| |
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| T |
49269659 |
caatacctgtatataaatataatggacaagtgttacattccatagcataattcattcatgcagtagaaacttaatgaacaaa-tgaagtattgtgcattg |
49269561 |
T |
|
| Q |
209 |
aattatagtaaaaagaaataaagagccaacctgaaagggtaccatgtaaactatctactataacagatagacttatgag-----ccatatctgtgacata |
303 |
Q |
| |
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|| |||||| |||| |||| ||||||||||||||| |||||||||||||| ||||||||| || |||||| || |||||| ||||||||| |
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| T |
49269560 |
gat---agtaaa--gaaaaaaag--ccaacctgaaagggtgccatgtaaactatccactataacatttatacttattagaggaaccatatgtgtgacata |
49269468 |
T |
|
| Q |
304 |
atccaccacatcctgctcattgctaaatatataacctaacacccgtcgagaggcgaaaatgatgaaactcaccaatatagcctcagaaactgcgatagcc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||| ||||||||||||||||| | | | |
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| T |
49269467 |
gtccaccacatcctgctcattgctaaatatataacctaacaccttccgagaggcgaaaatggtggaactcaccaaaatagcctcagaaactgcaacggtc |
49269368 |
T |
|
| Q |
404 |
atagcagcatagacagacaatcgtgctgcgtgtggacatccagctcctaatgcatttgaaactct |
468 |
Q |
| |
|
|||| |||| ||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
49269367 |
atagaagcaaagacagacaatcgcgctgcttgtggacatccacctcctaatgcatttgaaactct |
49269303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 578 - 626
Target Start/End: Complemental strand, 49269218 - 49269170
Alignment:
| Q |
578 |
atgtgaatcaaaaccttgctgctgagccagttgcttctggtattgtata |
626 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49269218 |
atgtgaatcaaaaccttgctgctgagccagttgcttctggtattgtata |
49269170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 30412508 - 30412601
Alignment:
| Q |
34 |
aatataacagcaattggaattccaaaaacataataggctccaaggttcacatatgctcccaacttctgccaaccacatcctctagcaataccta |
127 |
Q |
| |
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|||| ||||| ||| ||||| |||| || |||||| ||||| | || ||| |||| || | |||||||||||||||||||||||||| ||||| |
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| T |
30412508 |
aatacaacagaaatgggaatgccaacaagataataagctcctaaattaacaaatgcaccaagcttctgccaaccacatcctctagcaacaccta |
30412601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 30379851 - 30379883
Alignment:
| Q |
97 |
ttctgccaaccacatcctctagcaatacctata |
129 |
Q |
| |
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|||||||||||||||||||| |||||||||||| |
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| T |
30379851 |
ttctgccaaccacatcctcttgcaatacctata |
30379883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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