View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_high_22 (Length: 327)
Name: NF20174_high_22
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_high_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 327
Target Start/End: Original strand, 31998547 - 31998861
Alignment:
| Q |
13 |
atatgccaaatgtttgtgaactgcgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtctgactgtcatgaattgttgttcagtatgtcta |
112 |
Q |
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| T |
31998547 |
atatgccaaatgtttgtgaactgcgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtttgactgtcatgaattgttgttcagtatgtcta |
31998646 |
T |
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| Q |
113 |
atgttagtttaatttatgttaagagatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctggtctcttt |
212 |
Q |
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| T |
31998647 |
atgttagtttaatttatgttaagtgatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctggtctcttt |
31998746 |
T |
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| Q |
213 |
gattacacaactaaatgttgatataatttgtgttgtcacagcttgattaaaacaaaaagaaataaataaaagattttgataaattaatatctatctggtt |
312 |
Q |
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| T |
31998747 |
gattacacaactaaatgttgatataatttgtgttgtcacagcttgattaaaacaaaaagaaattaataaaagattttgagaaattaatatctatctggtt |
31998846 |
T |
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| Q |
313 |
tgtttttgtctaacc |
327 |
Q |
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| T |
31998847 |
tgtttttgtctaacc |
31998861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 42613096 - 42613200
Alignment:
| Q |
81 |
tgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgttaagagatgtaacaatagagttgctcatagttttgtaggaattgctaga |
180 |
Q |
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| T |
42613096 |
tgactgacttgaattgatattcagtatgtctaatgttagtttatgtt----taagagatgtaacagtagagctgctcat-ggttggtaggaattgctaga |
42613190 |
T |
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| Q |
181 |
aattgtggta |
190 |
Q |
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| T |
42613191 |
aactgtggta |
42613200 |
T |
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