View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20174_high_25 (Length: 296)

Name: NF20174_high_25
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20174_high_25
NF20174_high_25
[»] chr3 (3 HSPs)
chr3 (19-273)||(41330369-41330640)
chr3 (82-143)||(41330128-41330189)
chr3 (150-178)||(1283270-1283298)
[»] chr5 (2 HSPs)
chr5 (148-178)||(8281657-8281687)
chr5 (152-192)||(16274339-16274378)
[»] chr2 (1 HSPs)
chr2 (150-178)||(31498243-31498271)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 41330369 - 41330640
Alignment:
Q  19 acaccaacacgtgtcggataccagacacacgatcacttgtcaattcaaactaaattaccaattttccagtgagaaacatagcagaatcatttaattcaat 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||    
T  41330369 acaccaacacgtgtcagataccagacacacgatcacttgtcaattcaaactaaattagcaattttccagtgataaacataggagaatcatttaattcaat 41330468  T
Q  119 caacatagtttctatattgtgcattccagtgaaaaatgaattaattgaatgtaattacatc----------------gtgtctgacaccgacaaatcaga 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||    
T  41330469 caacatagtttctatattgtgcattccagtgaaaaatgaattaattgaatgtaattacatcgtgtcagagagtgtaagtgtctgacaccgacaaatcaga 41330568  T
Q  203 cacgcctttcatcagaagtatgtatcggtgttccagagattcaactatcaacaa-tcatagaccaaaaagct 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41330569 cacgcctttcatcagaagtatgtatcggtgttccagagattcaactatcaacaattcatagaccaaaaagct 41330640  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 41330128 - 41330189
Alignment:
Q  82 ttccagtgagaaacatagcagaatcatttaattcaatcaacatagtttctatattgtgcatt 143  Q
    ||||| |||||||||||| ||||||||| |||||||| ||||||||||||| ||| ||||||    
T  41330128 ttccattgagaaacatagtagaatcattcaattcaattaacatagtttctaaattctgcatt 41330189  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 178
Target Start/End: Original strand, 1283270 - 1283298
Alignment:
Q  150 aaaaatgaattaattgaatgtaattacat 178  Q
    |||||||||||||||||||||||||||||    
T  1283270 aaaaatgaattaattgaatgtaattacat 1283298  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 8281657 - 8281687
Alignment:
Q  148 tgaaaaatgaattaattgaatgtaattacat 178  Q
    |||||||||||||||||||||||||||||||    
T  8281657 tgaaaaatgaattaattgaatgtaattacat 8281687  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 16274378 - 16274339
Alignment:
Q  152 aaatgaattaattgaatgtaattacatcgtgtctgacaccg 192  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  16274378 aaatgaattaattgaatgtaatcacat-gtgtctgacaccg 16274339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 178
Target Start/End: Complemental strand, 31498271 - 31498243
Alignment:
Q  150 aaaaatgaattaattgaatgtaattacat 178  Q
    |||||||||||||||||||||||||||||    
T  31498271 aaaaatgaattaattgaatgtaattacat 31498243  T

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