View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20174_high_33 (Length: 256)

Name: NF20174_high_33
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20174_high_33
NF20174_high_33
[»] scaffold0386 (2 HSPs)
scaffold0386 (1-241)||(14952-15192)
scaffold0386 (162-231)||(3523-3592)
[»] chr4 (8 HSPs)
chr4 (162-241)||(5674428-5674502)
chr4 (87-159)||(5674318-5674390)
chr4 (162-237)||(5686964-5687039)
chr4 (162-241)||(5693081-5693159)
chr4 (162-241)||(5693849-5693927)
chr4 (100-154)||(5692981-5693035)
chr4 (100-154)||(5693749-5693803)
chr4 (86-154)||(5686850-5686918)
[»] chr3 (1 HSPs)
chr3 (162-208)||(18549691-18549737)
[»] chr1 (2 HSPs)
chr1 (169-237)||(14961980-14962049)
chr1 (2-53)||(52090344-52090395)
[»] chr6 (2 HSPs)
chr6 (8-50)||(27534209-27534251)
chr6 (8-50)||(27576516-27576558)
[»] chr5 (2 HSPs)
chr5 (8-53)||(38631526-38631571)
chr5 (198-230)||(13372164-13372196)


Alignment Details
Target: scaffold0386 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 15192 - 14952
Alignment:
Q  1 aaaaaaggtatgaacaaataattagaagaactgctctaacaaaaataagacggnnnnnnnngttacattgtatttttattaaaaatataatgaaatttta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||| |||||||||||||||||||||||||| |    
T  15192 aaaaaaggtatgaacaaataattagaagaactgctctaacaaaaataagacggaaaaaaaagttacattgtgtttttattaaaaatataatgaaatttga 15093  T
Q  101 agaacaattgtagggtttagatgcagattaccaaacattgacggatatgggatttgaaaccatttactttttgctatttaatttatgattgttaaagaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15092 agaacaattgtagggtttagatgcagattaccaaacattgacggatatgggatttgaaaccatttactttttgctatttaatttatgattgttaaagaaa 14993  T
Q  201 ctatttgcgttgtgcaacccccaaattttaatacatctgtg 241  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  14992 ctatttgccttgtgcaacccccaaattttaatacatctgtg 14952  T

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Target: scaffold0386; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 3592 - 3523
Alignment:
Q  162 atttactttttgctatttaatttatgattgttaaagaaactatttgcgttgtgcaacccccaaattttaa 231  Q
    |||||| ||||||||| ||  |||||| ||||||| ||||||| ||| ||||||||||||  ||||||||    
T  3592 atttacattttgctatgtatgttatgaatgttaaataaactatatgcattgtgcaaccccgcaattttaa 3523  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 5674428 - 5674502
Alignment:
Q  162 atttactttttgctatttaatttatgattgttaaagaaactatttgcgttgtgcaacccccaaattttaatacatctgtg 241  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||     ||||| | ||||||||||||||||||    
T  5674428 atttactttttgctatttaatttatgatggttaaagaaactatttgcgt-----aaccctccaattttaatacatctgtg 5674502  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 5674318 - 5674390
Alignment:
Q  87 ataatgaaattttaagaacaattgtagggtttagatgcagattaccaaacattgacggatatgggatttgaaa 159  Q
    |||||||||||  |||||||||| |||||||||| | ||  ||||||||||||||||||||||||||||||||    
T  5674318 ataatgaaattagaagaacaattatagggtttaggtacaatttaccaaacattgacggatatgggatttgaaa 5674390  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 5686964 - 5687039
Alignment:
Q  162 atttactttttgctatttaatttatgattgttaaagaaactatttgcgttgtgcaacccccaaattttaatacatc 237  Q
    |||||| ||||||||||||  |||||||||||||| ||||||| ||| ||||||||||||  |||||||| |||||    
T  5686964 atttacattttgctatttatgttatgattgttaaacaaactatctgcattgtgcaaccccgcaattttaaaacatc 5687039  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 5693081 - 5693159
Alignment:
Q  162 atttactttttgctatttaatttatgattgttaaagaaactatttgcgttgtgcaacccccaaattttaatacatctgtg 241  Q
    |||||| |||||||||||   |||||||||| ||| ||| ||||||| ||||||||||| | |||||||| |||||||||    
T  5693081 atttacattttgctatttgtgttatgattgtgaaacaaaatatttgcattgtgcaacccgc-aattttaaaacatctgtg 5693159  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 5693849 - 5693927
Alignment:
Q  162 atttactttttgctatttaatttatgattgttaaagaaactatttgcgttgtgcaacccccaaattttaatacatctgtg 241  Q
    |||||| |||||||||||   |||||||||| ||| ||| ||||||| ||||||||||| | |||||||| |||||||||    
T  5693849 atttacattttgctatttgtgttatgattgtgaaacaaaatatttgcattgtgcaacccgc-aattttaaaacatctgtg 5693927  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 5692981 - 5693035
Alignment:
Q  100 aagaacaattgtagggtttagatgcagattaccaaacattgacggatatgggatt 154  Q
    |||||||||| | |||||||| ||||| |||||||||||||||||| || |||||    
T  5692981 aagaacaattattgggtttaggtgcagtttaccaaacattgacggaaataggatt 5693035  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 5693749 - 5693803
Alignment:
Q  100 aagaacaattgtagggtttagatgcagattaccaaacattgacggatatgggatt 154  Q
    |||||||||| | |||||||| ||||| |||||||||||||||||| || |||||    
T  5693749 aagaacaattattgggtttaggtgcagtttaccaaacattgacggaaataggatt 5693803  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 5686850 - 5686918
Alignment:
Q  86 tataatgaaattttaagaacaattgtagggtttagatgcagattaccaaacattgacggatatgggatt 154  Q
    |||||||||| |  |||||||||| | || ||||| ||||| |||||||||||||||| |||| |||||    
T  5686850 tataatgaaactagaagaacaattattggatttaggtgcagtttaccaaacattgacgaatataggatt 5686918  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 18549691 - 18549737
Alignment:
Q  162 atttactttttgctatttaatttatgattgttaaagaaactatttgc 208  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||||    
T  18549691 atttacattttgctatttaatttttgattgttaaataaactatttgc 18549737  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 14961980 - 14962049
Alignment:
Q  169 ttttgctatttaatttatgattgttaaagaaactatttgcgttgtgcaa-cccccaaattttaatacatc 237  Q
    |||||||||||||||||||||| |||||  |||| |||||  ||| ||| ||||||||||||||||||||    
T  14961980 ttttgctatttaatttatgatttttaaaccaactctttgccatgttcaaccccccaaattttaatacatc 14962049  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 52090395 - 52090344
Alignment:
Q  2 aaaaaggtatgaacaaataattagaagaactgctctaacaaaaataagacgg 53  Q
    ||||| ||||| ||||||||||| |||||| |||||| ||||||||||||||    
T  52090395 aaaaaagtatgtacaaataattacaagaaccgctctatcaaaaataagacgg 52090344  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 27534209 - 27534251
Alignment:
Q  8 gtatgaacaaataattagaagaactgctctaacaaaaataaga 50  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||    
T  27534209 gtatggacaaaaaattagaagaagtgctctaacaaaaataaga 27534251  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 27576516 - 27576558
Alignment:
Q  8 gtatgaacaaataattagaagaactgctctaacaaaaataaga 50  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||    
T  27576516 gtatggacaaaaaattagaagaaatgctctaacaaaaataaga 27576558  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 38631526 - 38631571
Alignment:
Q  8 gtatgaacaaataattagaagaactgctctaacaaaaataagacgg 53  Q
    ||||||||||| | ||| ||||||| ||||||||||||||||||||    
T  38631526 gtatgaacaaaaatttacaagaactactctaacaaaaataagacgg 38631571  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 13372164 - 13372196
Alignment:
Q  198 aaactatttgcgttgtgcaacccccaaatttta 230  Q
    ||||||||||| |||||||||||||||||||||    
T  13372164 aaactatttgccttgtgcaacccccaaatttta 13372196  T

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