View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_high_36 (Length: 250)
Name: NF20174_high_36
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 9462245 - 9462486
Alignment:
| Q |
1 |
ctaattatatgtcggaaaaatatagatgtcacataagtttacaacaattagtggaaaactacac--tgaattagacatttcttctgaaatacaagaatca |
98 |
Q |
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| T |
9462245 |
ctaattatatgtcggaaaaatagagatgatacatgagcttaaaa---ttagtagcaaactacacactgaagttcacatttcttctgaaatacaagaatca |
9462341 |
T |
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| Q |
99 |
ccaactatcaaatacctgttttttatttcttctgtaactacaaagaaaatcaatacattgatcatatcaaaccaaatatgatgtaattaccaaaataatt |
198 |
Q |
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| T |
9462342 |
ccaactatcaaatacctgttttttatttcttctgtaattacaaagaaaatcaatacattgatcatatcaaaccaaatatgatgtaattaccaaaataatt |
9462441 |
T |
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| Q |
199 |
aatgactaaatatttaacctagaaaaggcttttgttttcatctca |
243 |
Q |
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| T |
9462442 |
aatgactaaatatttaacctagaaaaggcttttgttttcatctca |
9462486 |
T |
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