View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_high_5 (Length: 563)
Name: NF20174_high_5
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 124 - 547
Target Start/End: Original strand, 32718029 - 32718452
Alignment:
| Q |
124 |
aaatagtgtagattaagctttaacaagaattgatttgaaaatttgagaataatcgaaagttttgattacattttttaaaccgtgttagtagaaatatggg |
223 |
Q |
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| T |
32718029 |
aaatagtgtagattaagctttaacaagaattgatttgaaaatttgagaataatcgaaagttttgattacattttttaaaccgggttagtagaaatatggg |
32718128 |
T |
|
| Q |
224 |
gagaggcaaggatacagttttgtggagtgatgaatgggttggtgcagtcaccttaaaaagggggtttgacctgatttattccctgtcattatgtaaggaa |
323 |
Q |
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| T |
32718129 |
gagaggcaaggatacagttttttggactgatgaatgggttggtgcagtcaccttaaaaagggggtttgacctgatttattccctgtcattatgtaaggaa |
32718228 |
T |
|
| Q |
324 |
gctagcgtctcatatgtgaggaggaaagttgaaaatacttgggtgtggaatctgcaccggtctagagagctatatagttgggatggagacatgttgaaca |
423 |
Q |
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| T |
32718229 |
gctagagtctcatatgtgaggaggaaagttgaaaatacttgggtgtgggatctgcactggtctagagcgctatatagttgggatggagacatgttgaaca |
32718328 |
T |
|
| Q |
424 |
caatgttggaggagttagaggaagttaatgttagggaaggtagtttccgataataaaactttggaataaaattattccgtcgaaggtgtttgtgtttgta |
523 |
Q |
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| T |
32718329 |
caatgttggaggagttagaggaagttaatgttagggaaggtagtttccgataaaaaaactttcgaataaaattattccgtcgaaggtgtttgtgtttgta |
32718428 |
T |
|
| Q |
524 |
tggcaggtaatgcaaaatcgtatt |
547 |
Q |
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| T |
32718429 |
tggcaggtaatgcaaaatcgtatt |
32718452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 246 - 450
Target Start/End: Complemental strand, 9585702 - 9585500
Alignment:
| Q |
246 |
tggagtgatgaatgggttggtgcagtcaccttaaaaagggggtttgacctgatttattccctgtcattatgtaaggaagctagcgtctcatatgtgagga |
345 |
Q |
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| T |
9585702 |
tggagcgacgaatgggttggtggaaccacattaaaaaggaggatcgatcggctttattccctatcattgtgtaaggagcctggcatcaaatatg--agga |
9585605 |
T |
|
| Q |
346 |
ggaaagttgaaaatacttgggtgtggaatctgcaccggtctagagagctatatagttgggatggagacatgttgaacacaatgttggaggagttagagga |
445 |
Q |
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| T |
9585604 |
ggaaagttgaaaatacttgggtgtgagacctgaactggtctagagagctatatggttgggaaggagacacgctgaacacaatattggaggagttaaaggc |
9585505 |
T |
|
| Q |
446 |
agtta |
450 |
Q |
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||||| |
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| T |
9585504 |
agtta |
9585500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 465 - 547
Target Start/End: Complemental strand, 9579877 - 9579795
Alignment:
| Q |
465 |
agtttccgataataaaactttggaataaaattattccgtcgaaggtgtttgtgtttgtatggcaggtaatgcaaaatcgtatt |
547 |
Q |
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| T |
9579877 |
agtttccgataaaaaaacttcggaataaaattattctgtcgaaggtgtccgtgtttgtatggcaggtaatgcaaaatcgtatt |
9579795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 211 - 435
Target Start/End: Complemental strand, 9580211 - 9579981
Alignment:
| Q |
211 |
gtagaaatatggggagaggcaaggatacagttttgtggagtgatgaatgggttggtgcagtcaccttaaaaagggggtttgacctga-tttattccctgt |
309 |
Q |
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|||||||||||||| || || ||| ||| |||| ||||| || |||| |||||||| ||||||||||||| || |||| |||| |||||||||| | |
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| T |
9580211 |
gtagaaatatggggggaagcgagggcacatttttttggagcgacgaataggttggtggagtcaccttaaaa--ggagtttcgactgactttattccctat |
9580114 |
T |
|
| Q |
310 |
cattatgtaaggaagctagcgtctcatatgtgaggaggaaagttgaaaatacttgggtgtggaatctgcaccggtctaga-------gagctatatagtt |
402 |
Q |
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|||| |||||||| ||||| || ||| || || ||||||||||||||| ||||| | |||| | |||||| |||||||| ||||||||| || |
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| T |
9580113 |
cattgtgtaaggaggctagagtttcagatacgatgaggaaagttgaaaacacttgagcgtgggacctgcactggtctagactctagagagctatatggtc |
9580014 |
T |
|
| Q |
403 |
gggatggagacatgttgaacacaatgttggagg |
435 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
9580013 |
gggaaggagacatgttgaacacaatgttggagg |
9579981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 32717891 - 32717940
Alignment:
| Q |
1 |
tctggttaagttgtcatattgttcaagaccaatgaaaaaagatgcataac |
50 |
Q |
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| T |
32717891 |
tctggttaagttgtcatattgttcaagaccaatgaaaaaagatgcataac |
32717940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 481 - 547
Target Start/End: Complemental strand, 9585412 - 9585346
Alignment:
| Q |
481 |
actttggaataaaattattccgtcgaaggtgtttgtgtttgtatggcaggtaatgcaaaatcgtatt |
547 |
Q |
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| T |
9585412 |
actttggaataaaattattatgtcgaaggtgtccgtgtttgtatggtaggtaatgcaaaattgtatt |
9585346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 32717958 - 32717994
Alignment:
| Q |
69 |
ctgtaaaatagacgtcaacactataaatctcctttgc |
105 |
Q |
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| T |
32717958 |
ctgtaaaatagacgtcaaaactataaatctcctttgc |
32717994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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