View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20174_high_8 (Length: 493)

Name: NF20174_high_8
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20174_high_8
NF20174_high_8
[»] chr6 (4 HSPs)
chr6 (9-428)||(14367507-14367934)
chr6 (408-475)||(14368017-14368084)
chr6 (435-474)||(14368093-14368132)
chr6 (393-475)||(16509327-16509408)
[»] chr8 (6 HSPs)
chr8 (49-348)||(26463246-26463549)
chr8 (393-477)||(38198163-38198246)
chr8 (393-475)||(34552608-34552689)
chr8 (394-469)||(31543194-31543269)
chr8 (394-468)||(26463568-26463641)
chr8 (393-429)||(20472738-20472774)
[»] chr2 (5 HSPs)
chr2 (393-475)||(21662325-21662406)
chr2 (406-475)||(41778832-41778901)
chr2 (393-475)||(886964-887044)
chr2 (385-469)||(31086544-31086627)
chr2 (393-430)||(14187120-14187157)
[»] chr1 (3 HSPs)
chr1 (393-465)||(27739098-27739169)
chr1 (398-469)||(25541939-25542008)
chr1 (393-472)||(49832593-49832672)
[»] chr4 (3 HSPs)
chr4 (398-475)||(47694401-47694477)
chr4 (394-469)||(47433830-47433906)
chr4 (393-475)||(55510216-55510298)
[»] chr3 (5 HSPs)
chr3 (393-430)||(34579859-34579896)
chr3 (394-475)||(54996796-54996874)
chr3 (393-430)||(18086026-18086063)
chr3 (394-475)||(46204933-46205014)
chr3 (394-454)||(651778-651838)
[»] chr7 (2 HSPs)
chr7 (394-475)||(33655224-33655305)
chr7 (393-469)||(33224136-33224211)
[»] chr5 (3 HSPs)
chr5 (393-430)||(34980971-34981008)
chr5 (393-450)||(40644084-40644140)
chr5 (394-430)||(33744240-33744276)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 9 - 428
Target Start/End: Original strand, 14367507 - 14367934
Alignment:
Q  9 tcgaagaatatcaaaattaaacacaatgtaaaaacaaaagaaccaaatcaaaccaacatattattcatcaatttagtttgaaattcatgagagaaaatat 108  Q
    ||||| || |||||||||||||| |||||||||||||||||| || ||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  14367507 tcgaacaaaatcaaaattaaacaaaatgtaaaaacaaaagaatcatatcaaaccaacatgttcttcatcaatttagtttgaaattcatgagagaaaatat 14367606  T
Q  109 ttttgaatcaaacaaaaccgatgattttttagtggtttggannnnnnnccatcacaaacttaaaccaaatcaacttgttacccttaacgctgcatnnnnn 208  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||| |||||||||||||||||||||||||         
T  14367607 ttttgaatcaaacaaaaccgatgattttttagtggtttggatttttttccatcacaaacttaaatcaaaccaacttgttacccttaacgctgcat-agaa 14367705  T
Q  209 nnnnctaggtttaaatatgaactcttaaaatagtaatgctgaggttgttcacatgagacgaagtggcactggcaattaacttgttcttggtttggtccaa 308  Q
        ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  14367706 aaaactaggtttaaatatgaactctcaaaatagtagtgctgaggttgttcacatgagacgaagtggcactggaaattaacttgttcttggcttggtccaa 14367805  T
Q  309 tttgtcatttcaaaccgaaagaaaatttgatttgttgattcc-----------tnnnnnnnnnnnttggtttgttgattttagtttgggagacatcttac 397  Q
    |||||||||| |||||||||||||  ||| ||||||||||||           |           ||||||||||||||||||||| ||||| |||||||    
T  14367806 tttgtcattttaaaccgaaagaaa--ttggtttgttgattcctcaaaaaaaaataaaaaaaaaaattggtttgttgattttagttttggagagatcttac 14367903  T
Q  398 ttttctcttttaaattatagacattataaaa 428  Q
    |||||||||||||||||||||||||||||||    
T  14367904 ttttctcttttaaattatagacattataaaa 14367934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 408 - 475
Target Start/End: Original strand, 14368017 - 14368084
Alignment:
Q  408 taaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcat 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14368017 taaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatgatcat 14368084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 474
Target Start/End: Original strand, 14368093 - 14368132
Alignment:
Q  435 tttaaaatcaattaagtgtggtcgaagtattatatcatca 474  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  14368093 tttaaaatcaattaagtgtggtcgaagtattatatgatca 14368132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 475
Target Start/End: Original strand, 16509327 - 16509408
Alignment:
Q  393 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcat 475  Q
    ||||||||||| |||| ||||| ||||| ||||||||| || || ||||| ||| ||||||| | |||||||||||| |||||    
T  16509327 cttacttttcttttttgaattaaagacactataaaatg-tttttaaaaataaatcaagtgtgattgaagtattatatgatcat 16509408  T

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Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 348
Target Start/End: Original strand, 26463246 - 26463549
Alignment:
Q  49 aaccaaatcaaaccaacatattattcatcaatttagtttgaaattcatgagagaaaatatttttgaatcaaacaaaaccgatgattttttagtggtttgg 148  Q
    ||||| |||||||||||   || |||||||||| ||||||||||||||||| ||||| |   ||||||||||  ||||| || ||||| |||| ||||||    
T  26463246 aaccatatcaaaccaactcgttcttcatcaattcagtttgaaattcatgagggaaaaaa--attgaatcaaatgaaaccaatcattttgtagtagtttgg 26463343  T
Q  149 annnnnnnccatcacaaacttaaaccaaatcaacttgtt--acccttaacgctgcatnnnnnnnnnctaggtttaaatatgaactcttaaaatagtaatg 246  Q
    |       |||||| |||||||||||||| ||||| | |  ||||||||||||||||         |||| |||||||||||||||| |||| |||| ||    
T  26463344 attttttcccatcaaaaacttaaaccaaaccaactcgatacacccttaacgctgcat-agaaaaaactagatttaaatatgaactctgaaaaaagtagtg 26463442  T
Q  247 ctgaggttgttcacatgagacgaagtggcactggcaattaacttgttc----ttggtttggtccaatt-tgtcatttcaaaccgaaagaaaatttgattt 341  Q
    || ||||||||||||| |||  ||||| ||||||||| |  |||| ||    || ||||| ||||||| | |||||||||| | ||| |||||||| |||    
T  26463443 cttaggttgttcacattagagaaagtgccactggcaacttgcttgctcatggtttgtttgctccaattatctcatttcaaaaccaaacaaaatttggttt 26463542  T
Q  342 gttgatt 348  Q
    |||||||    
T  26463543 gttgatt 26463549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 477
Target Start/End: Complemental strand, 38198246 - 38198163
Alignment:
Q  393 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatat 477  Q
    ||||||||||  |||||||||| ||||| |||||| || || |||||||| ||||||||||| | |||||||||||| |||||||    
T  38198246 cttacttttcatttttaaattacagacactataaagtgttt-tttaaaatgaattaagtgtgattgaagtattatatgatcatat 38198163  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 475
Target Start/End: Original strand, 34552608 - 34552689
Alignment:
Q  393 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcat 475  Q
    ||||||||||||||||||||||| |||| |||| |||| || |||||||| ||||||| ||  | |||||||||||| |||||    
T  34552608 cttacttttctcttttaaattattgacactatataatg-ttttttaaaattaattaagcgtaattgaagtattatatgatcat 34552689  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 469
Target Start/End: Complemental strand, 31543269 - 31543194
Alignment:
Q  394 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatat 469  Q
    |||||||||| ||||||||||| |||  ||||| ||| || | |||||| ||||||||||| | ||||||||||||    
T  31543269 ttacttttcttttttaaattatggaccatataacatgtttttctaaaataaattaagtgtgattgaagtattatat 31543194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 468
Target Start/End: Original strand, 26463568 - 26463641
Alignment:
Q  394 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattata 468  Q
    |||| |||||||||||||||||  |||  || |||||||| |||||||||||||||||||| || ||| ||||||    
T  26463568 ttacctttctcttttaaattatgtacacgatgaaatgctt-tttaaaatcaattaagtgtgatcaaaggattata 26463641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 20472738 - 20472774
Alignment:
Q  393 cttacttttctcttttaaattatagacattataaaat 429  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  20472738 cttacttttcttttttaaattacagacattataaaat 20472774  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 393 - 475
Target Start/End: Complemental strand, 21662406 - 21662325
Alignment:
Q  393 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcat 475  Q
    ||||||||||||||||||| |||||||| | ||||||| || ||||||||||||||||| || | |||||||||||| |||||    
T  21662406 cttacttttctcttttaaagtatagacactgtaaaatg-ttttttaaaatcaattaagtttgattgaagtattatatgatcat 21662325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 475
Target Start/End: Original strand, 41778832 - 41778901
Alignment:
Q  406 tttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcat 475  Q
    |||||||||| |||| ||||||||| || |||||||| ||||||||||| | |||||||||||| |||||    
T  41778832 tttaaattatggacagtataaaatgtttttttaaaataaattaagtgtgattgaagtattatatgatcat 41778901  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 475
Target Start/End: Original strand, 886964 - 887044
Alignment:
Q  393 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcat 475  Q
    ||||||||||| |||||||||| |  || |||||||||||| |||||||| ||||| ||||| | |||||||||||| |||||    
T  886964 cttacttttcttttttaaattaca--caatataaaatgcttttttaaaataaattatgtgtgattgaagtattatatgatcat 887044  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 469
Target Start/End: Original strand, 31086544 - 31086627
Alignment:
Q  385 ggagacatcttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatat 469  Q
    ||||| || ||||||||||||||||||||| | | ||| ||||||| || ||||||||||| |||||||| | |||||| |||||    
T  31086544 ggagaaattttacttttctcttttaaattacatatattttaaaatg-ttttttaaaatcaactaagtgtgattgaagtagtatat 31086627  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 430
Target Start/End: Original strand, 14187120 - 14187157
Alignment:
Q  393 cttacttttctcttttaaattatagacattataaaatg 430  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  14187120 cttacttttcttttttaaattataaacattataaaatg 14187157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 465
Target Start/End: Original strand, 27739098 - 27739169
Alignment:
Q  393 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtatt 465  Q
    |||||||||||||||||||||||| | | ||||||||| || |||||||||||||||||||| | ||||||||    
T  27739098 cttacttttctcttttaaattataaatactataaaatg-ttttttaaaatcaattaagtgtgattgaagtatt 27739169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 469
Target Start/End: Original strand, 25541939 - 25542008
Alignment:
Q  398 ttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatat 469  Q
    ||||||||||||||||||||||| ||||||||   | |||||||||||||||||||||| | ||| ||||||    
T  25541939 ttttctcttttaaattatagacactataaaat--atttttaaaatcaattaagtgtggttggagtgttatat 25542008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 472
Target Start/End: Original strand, 49832593 - 49832672
Alignment:
Q  393 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcat 472  Q
    ||||||||||| |||||||||| ||| | |||||| || || || ||||| || |||||||| | |||||||||||||||    
T  49832593 cttacttttcttttttaaattacagataatataaagtgttttttaaaaataaaataagtgtgattgaagtattatatcat 49832672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 475
Target Start/End: Original strand, 47694401 - 47694477
Alignment:
Q  398 ttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcat 475  Q
    |||||||||||||||||  |||| ||| |||||||| | |||||||||| ||||| ||| |||||||||||| |||||    
T  47694401 ttttctcttttaaattacggacactatgaaatgctt-tctaaaatcaatcaagtgcggttgaagtattatatgatcat 47694477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 469
Target Start/End: Complemental strand, 47433906 - 47433830
Alignment:
Q  394 ttacttttctcttttaaattatagac-attataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatat 469  Q
    |||||||||| |||||||||| |||| || |||| ||| || |||||||| ||||||||||| | ||||||||||||    
T  47433906 ttacttttcttttttaaattacagactataataacatgtttttttaaaataaattaagtgtgattgaagtattatat 47433830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 475
Target Start/End: Original strand, 55510216 - 55510298
Alignment:
Q  393 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcat 475  Q
    ||||||||||  |||||| ||| ||||| | ||||||| || |||||||| |||||||||||   |||||||||||| |||||    
T  55510216 cttacttttcatttttaatttaaagacaatgtaaaatgtttttttaaaataaattaagtgtgactgaagtattatatgatcat 55510298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 430
Target Start/End: Original strand, 34579859 - 34579896
Alignment:
Q  393 cttacttttctcttttaaattatagacattataaaatg 430  Q
    |||| |||||||||||||||||||||||||||||||||    
T  34579859 cttatttttctcttttaaattatagacattataaaatg 34579896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 475
Target Start/End: Complemental strand, 54996874 - 54996796
Alignment:
Q  394 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcat 475  Q
    |||||||||| |||||||||| |||  |||||||||| ||||| ||||| ||| ||||||| | |||||||||||| |||||    
T  54996874 ttacttttcttttttaaattacaga--ttataaaatgtttatt-aaaatgaatgaagtgtgattgaagtattatatgatcat 54996796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 430
Target Start/End: Original strand, 18086026 - 18086063
Alignment:
Q  393 cttacttttctcttttaaattatagacattataaaatg 430  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  18086026 cttacttttcttttttaaattacagacattataaaatg 18086063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 475
Target Start/End: Original strand, 46204933 - 46205014
Alignment:
Q  394 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcat 475  Q
    |||||||||| |||||||||||  ||  ||||| ||| || | |||||| ||||||||||| | |||||||||||| |||||    
T  46204933 ttacttttcttttttaaattatgaactatataacatgtttttctaaaataaattaagtgtgattgaagtattatatgatcat 46205014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 454
Target Start/End: Original strand, 651778 - 651838
Alignment:
Q  394 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtg 454  Q
    |||||||||| |||||||||||||||  ||||| ||| || | |||||| |||||||||||    
T  651778 ttacttttcttttttaaattatagactatataacatgtttttctaaaataaattaagtgtg 651838  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 475
Target Start/End: Complemental strand, 33655305 - 33655224
Alignment:
Q  394 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcat 475  Q
    |||||||||| ||||||||||| | |  ||||| ||| || | |||||| ||||||||||| | |||||||||||| |||||    
T  33655305 ttacttttcttttttaaattatgggctatataacatgtttttctaaaataaattaagtgtgattgaagtattatatgatcat 33655224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 469
Target Start/End: Original strand, 33224136 - 33224211
Alignment:
Q  393 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatat 469  Q
    |||||||||||||||| |||| | |||| ||||||||  || ||| ||||||||||| |||| | ||||||||||||    
T  33224136 cttacttttctctttttaatttttgacactataaaat-atttttttaaatcaattaaatgtgtttgaagtattatat 33224211  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 34981008 - 34980971
Alignment:
Q  393 cttacttttctcttttaaattatagacattataaaatg 430  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  34981008 cttacttttcttttttaaattatggacattataaaatg 34980971  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 40644140 - 40644084
Alignment:
Q  393 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaag 450  Q
    |||||||||||||||| |||||  |||| |||||||| ||| ||||||||||||||||    
T  40644140 cttacttttctcttttgaattacggacactataaaat-cttttttaaaatcaattaag 40644084  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 33744240 - 33744276
Alignment:
Q  394 ttacttttctcttttaaattatagacattataaaatg 430  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  33744240 ttacttttcttttttaaattatggacattataaaatg 33744276  T

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