View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20174_low_10 (Length: 453)

Name: NF20174_low_10
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20174_low_10
NF20174_low_10
[»] chr7 (3 HSPs)
chr7 (15-95)||(2794073-2794153)
chr7 (94-211)||(2794182-2794295)
chr7 (226-271)||(26048496-26048541)
[»] chr6 (2 HSPs)
chr6 (18-188)||(16389774-16389944)
chr6 (349-389)||(16390158-16390198)
[»] chr4 (2 HSPs)
chr4 (18-96)||(48669030-48669108)
chr4 (327-387)||(48669427-48669487)
[»] chr5 (1 HSPs)
chr5 (233-285)||(5091753-5091806)
[»] chr3 (1 HSPs)
chr3 (236-299)||(49980286-49980350)
[»] chr2 (2 HSPs)
chr2 (223-279)||(8208088-8208144)
chr2 (231-271)||(28600966-28601006)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 2794073 - 2794153
Alignment:
Q  15 acttgatgagacgacaattatcaatggagcacttgacttgacccaaaaggtaagtgttgcaattcaccttccacattcaat 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  2794073 acttgatgagacgacaattatcaatggagcacttgacttgacccaaaaggtaagttctgcaattcaccttccacattcaat 2794153  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 2794182 - 2794295
Alignment:
Q  94 atgtccataaaacactatttttcaatgtatgatattcaacgcagcgtaatatgaagtctcttgcctatgttgagttttgatttacattggtgatgaagga 193  Q
    ||||||| ||||||||||||||||| |||||||| ||||| |||    ||||||||| ||||||||||||| ||||||||| ||||||||||||| ||||    
T  2794182 atgtccaaaaaacactatttttcaacgtatgatactcaacacag----atatgaagtttcttgcctatgttcagttttgatatacattggtgatggagga 2794277  T
Q  194 aatgtaatagtaataggg 211  Q
    ||||||||||||||||||    
T  2794278 aatgtaatagtaataggg 2794295  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 26048496 - 26048541
Alignment:
Q  226 aaaatatggaaaatgctaacgagtgcccaggggcacttgttaagga 271  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||    
T  26048496 aaaatatggaaaatgttaacgagtgccccggggcactcgttaagga 26048541  T

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Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 16389774 - 16389944
Alignment:
Q  18 tgatgagacgacaattatcaatggagcacttgacttgacccaaaaggtaagtgttgcaattcaccttccacattcaatgtccataaaacactatttttca 117  Q
    ||||||||| |||||||||| |||||||||||| |||||| |||||||||||| ||||||||||||| ||||   |||||| |||  | || | ||||||    
T  16389774 tgatgagacaacaattatcagtggagcacttgatttgaccgaaaaggtaagtgctgcaattcacctttcacaactaatgtcaatacgatacaaattttca 16389873  T
Q  118 atgtatgatattcaacgcagcgtaatatgaagtctcttgcctatgttgagttttgatttacattggtgatg 188  Q
    ||||||||||||||| ||||   |||||||||| |||| ||| ||| |||||||||| ||||||| |||||    
T  16389874 atgtatgatattcaatgcagaagaatatgaagtttcttacctgtgtcgagttttgatatacattgttgatg 16389944  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 16390158 - 16390198
Alignment:
Q  349 gttctctctattttttgcttcatttttaactatatcatgtt 389  Q
    ||||||||||| ||||| |||||| ||||||||||||||||    
T  16390158 gttctctctatgttttggttcattattaactatatcatgtt 16390198  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 48669030 - 48669108
Alignment:
Q  18 tgatgagacgacaattatcaatggagcacttgacttgacccaaaaggtaagtgttgcaattcaccttccacattcaatg 96  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||||||||| ||||  |||||||||||||||||||    
T  48669030 tgatgagacgacaattatcagtggagcacttgatttgaccgaaaaggtaagtgctgcaggtcaccttccacattcaatg 48669108  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 48669427 - 48669487
Alignment:
Q  327 atacattctcatgtgtactcgagttctctctattttttgcttcatttttaactatatcatg 387  Q
    |||||||||||||  |||| |||||||||| || ||||||||| || ||||||||||||||    
T  48669427 atacattctcatgaatacttgagttctctcaatgttttgcttcgttgttaactatatcatg 48669487  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 5091753 - 5091806
Alignment:
Q  233 ggaaaatgctaacgagtgccca-ggggcacttgttaaggaattataaatggaaa 285  Q
    |||||||| |||| |||||||  ||||||||||||||||||||||||| |||||    
T  5091753 ggaaaatgttaacaagtgcccccggggcacttgttaaggaattataaaaggaaa 5091806  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 49980286 - 49980350
Alignment:
Q  236 aaatgctaacgagtgcccaggg-gcacttgttaaggaattataaatggaaacattacattggaaa 299  Q
    |||||||||| |||||||| || ||||||||||||||||||| || ||||| ||||  |||||||    
T  49980286 aaatgctaacaagtgcccatggagcacttgttaaggaattatgaaaggaaatattatcttggaaa 49980350  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 8208144 - 8208088
Alignment:
Q  223 attaaaatatggaaaatgctaacgagtgcccaggggcacttgttaaggaattataaa 279  Q
    |||||||||||  |||||||||| |||||| | ||||||| ||||||| ||||||||    
T  8208144 attaaaatatgagaaatgctaactagtgcctacgggcactggttaaggtattataaa 8208088  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 28600966 - 28601006
Alignment:
Q  231 atggaaaatgctaacgagtgcccaggggcacttgttaagga 271  Q
    ||||||||||||||| ||||||| |||||||| ||||||||    
T  28600966 atggaaaatgctaaccagtgcccgggggcactggttaagga 28601006  T

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