View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20174_low_11 (Length: 426)
Name: NF20174_low_11
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 35252606 - 35252999
Alignment:
| Q |
14 |
cagagacattaactagaacttcatttccatatcttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtc |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35252606 |
cagagacatttactagaacttcatttccatatcttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtc |
35252705 |
T |
|
| Q |
114 |
cagtaattaatacatcagaggcacctcctttattacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattattt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35252706 |
cagtaattaatacatcagaggcacctcctttattacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattattt |
35252805 |
T |
|
| Q |
214 |
acttactatttatgcaaccacctcgtatacttttatagttttaataggttcaactatgactgagtctaactgtataacctctgtaacatttacttaaaca |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35252806 |
acttactatttatgcaaccacctcgtatacttttatagttttaataggttcaactatgactgagtctaactgtataacctctgtaacatttactt-aaca |
35252904 |
T |
|
| Q |
314 |
gagatatagatgggactcaatgatcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatgg |
408 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
35252905 |
gagatatagatgggacttaatgatcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaagacgttagggtatcgaggatgg |
35252999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 35240354 - 35240748
Alignment:
| Q |
14 |
cagagacattaactagaacttcatttccatatcttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
35240354 |
cagagacattaactagaacttcatttccatatcttcaccacagaattactgctagctgatgcaatatcgaattcacttcgcgctgtagtagctgctagtc |
35240453 |
T |
|
| Q |
114 |
cagtaattaatacatcagaggcacctcctttattacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattattt |
213 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| ||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35240454 |
cagtaattaatacatcagaggcatctcctttagtacgtatttccctggtctcaacagtcaacaattccaagcactgcaataagttgtccacagattattt |
35240553 |
T |
|
| Q |
214 |
acttactatttatgcaaccacctcgtatacttttatagttttaataggttcaactatgactgagtctaactgtataacctctgtaacatttacttaaaca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35240554 |
acttactatttatgcaaccacctcgtatacttttatagttttaataggttcaactatgactgagtctaactg--taacctctgtaacatttacttaaacg |
35240651 |
T |
|
| Q |
314 |
gagatatagatgggactcaatgatc--ataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatgg |
408 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||| || | ||| |||||||||||| |
|
|
| T |
35240652 |
gagatatagatgggacacaacaatcatataatagaagcagagggaagagtttacctgaaaaccagcaacaactaagacgtcaggatatcgaggatgg |
35240748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 35245818 - 35246027
Alignment:
| Q |
14 |
cagagacattaactagaacttcatttccatatcttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtc |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| ||||||| ||||||| |||||||||| |||||||||| ||||||| | ||||||||||| |
|
|
| T |
35245818 |
cagagacattaactagaatttcatttccatagcttcaccatagaatcagtgctagcggatgcaatatggaattcactttgcgccgttgaagctgctagtc |
35245917 |
T |
|
| Q |
114 |
cagtaattaatacatcagaggcacctcctttattacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattattt |
213 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||||| ||||| | | |||||| ||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35245918 |
cagtaattgatatatcagaggcacttcctttattaaatctttgcccgttctcaataatcaaccattccaagcactgcaataagttgtccgaagattattt |
35246017 |
T |
|
| Q |
214 |
acttactatt |
223 |
Q |
| |
|
||||| |||| |
|
|
| T |
35246018 |
acttaatatt |
35246027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 260 - 408
Target Start/End: Original strand, 35246229 - 35246374
Alignment:
| Q |
260 |
ggttcaactatgactgagtctaactgtataacctctgtaacatttacttaaacagagatatagatgggactcaatgatcataatagaagcgcagggaagt |
359 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| ||||||||| ||||||||||||| || || ||||||||||| ||| ||| |||| |
|
|
| T |
35246229 |
ggttcaactatgactgagtctaagtgta--acctctgtaacagttacttaaatggagatatagatggcacacac-gatcataatagtagcagaggaaagt |
35246325 |
T |
|
| Q |
360 |
gtttacctgaaaaccagcaacaactaacacattagggtatcgaggatgg |
408 |
Q |
| |
|
||||||||||||||| ||| |||||| || |||||||||||||||| |
|
|
| T |
35246326 |
atttacctgaaaaccaccaataactaagacgccagggtatcgaggatgg |
35246374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 408
Target Start/End: Original strand, 35286411 - 35286565
Alignment:
| Q |
252 |
ttttaataggttcaactatgactgagtctaactgtataacctctgtaacatttacttaaacagagatatagatgggactcaatgatcataatagaagcgc |
351 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||| ||||| |||||| |||| |||| | ||||| | | || | |||| |||||| ||||| | |
|
|
| T |
35286411 |
ttttaaaaggttcaactatgactgaggctaaatgta--acctcagtaacagttacataaaagtatatataaaagaaacaccatgaacataatggaagcac |
35286508 |
T |
|
| Q |
352 |
agggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatgg |
408 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||| || ||| |||||||||||||| |
|
|
| T |
35286509 |
agggaagagtttacctgaaaaccaccaacaactaagacgttacggtatcgaggatgg |
35286565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 408
Target Start/End: Original strand, 35270789 - 35270861
Alignment:
| Q |
336 |
atcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatgg |
408 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| | ||| |||||| || |||||||||||||||||| |
|
|
| T |
35270789 |
atcataatggaagcggagggaagtgtttacctgaaaacaaccaataactaagacgttagggtatcgaggatgg |
35270861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 408
Target Start/End: Original strand, 35277398 - 35277514
Alignment:
| Q |
292 |
ctctgtaacatttacttaaacagagatatagatgggactcaatgatcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacat |
391 |
Q |
| |
|
|||| ||||| | ||||||| |||||||||| | ||| | ||||||||||| ||||| ||||||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
35277398 |
ctctataacagtcacttaaaaggagatatagaagagacactatgatcataatggaagcagagggaagagtttacctgaaaaccgccaacaactaagacat |
35277497 |
T |
|
| Q |
392 |
tagggtatcgaggatgg |
408 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
35277498 |
tacggtattgaggatgg |
35277514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 35270037 - 35270105
Alignment:
| Q |
162 |
tctcaagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaa |
230 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| |||| |||| ||||||||||| || ||||||||| |
|
|
| T |
35270037 |
tctcaagaatcaacaattccaggcactgtaataaattgtacacatattatttactttctctttatgcaa |
35270105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 35277094 - 35277159
Alignment:
| Q |
165 |
caagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaa |
230 |
Q |
| |
|
||||| |||||||||||| || ||||||||| |||| |||||||||||||||| | || ||||||| |
|
|
| T |
35277094 |
caagagtcaacaattccatgccctgcaataaattgtacacagattatttactttccatctatgcaa |
35277159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 35285852 - 35285893
Alignment:
| Q |
15 |
agagacattaactagaacttcatttccatatcttcaccacag |
56 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
35285852 |
agagacatcaactagaacttcatttccatatgttcaccacag |
35285893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 35269914 - 35269958
Alignment:
| Q |
30 |
aacttcatttccatatcttcaccacagaatcactgctagctgatg |
74 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35269914 |
aacttcatctccatatcttcaccacagaatcatcgctagctgatg |
35269958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 35274830 - 35274873
Alignment:
| Q |
162 |
tctcaagaatcaacaattccaagcactgcaataagttgtccaca |
205 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| |||| |
|
|
| T |
35274830 |
tctcaagaatcaacatttccaagcactgcaataaattgtacaca |
35274873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 35282681 - 35282746
Alignment:
| Q |
165 |
caagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaa |
230 |
Q |
| |
|
||||| || ||||||||| |||||||||||| |||| ||||||||| || ||| | |||||||||| |
|
|
| T |
35282681 |
caagagtccacaattccatgcactgcaataaattgtacacagattagttgctttccatttatgcaa |
35282746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University