View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_low_12 (Length: 419)
Name: NF20174_low_12
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 41367922 - 41367675
Alignment:
| Q |
1 |
agtgtcattgttgaaaatgctatcgcgagagttttgaacatagtcttcatgataaatggaaaaatgtaacaaattaaatttgaagaagnnnnnnngttat |
100 |
Q |
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| T |
41367922 |
agtgtcattgttgaaaatgctatcgcgagagttttgaacatagtcttcatgataaatggaaaaatgtaacaaattaaatttgaagaagaaaaaaagttat |
41367823 |
T |
|
| Q |
101 |
ttaagtttgagaaaatttatatcaagttggcaatagaacaaaaaccatttctcttcttagttcttgcttgtaaccaagctcattgattctcttctctgct |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41367822 |
ttaagtttgagaaaatttatatcaaggtggcaatagaacaaaaaccatttctcttcttagttcttgcttgtaaccaagctcattgattctcttctctgct |
41367723 |
T |
|
| Q |
201 |
taatccacagcagtgttttctgtcatttccacaaaattttgcttaaat |
248 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
41367722 |
taatccatagcagtgttttctgtcatttccacaaaattttgctcaaat |
41367675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 282 - 390
Target Start/End: Complemental strand, 41367681 - 41367569
Alignment:
| Q |
282 |
ctcaaattaaagttgttcctgatcatgtgcgattcctttccttaattttcattccaacaacattcaataaagcttt----ttacatcgattattaccaac |
377 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41367681 |
ctcaaattaaagttgttgctgatcatgtgcgattcctttccttaattttcattccaacaacattcaataaagctttttaattacatcgattattaccaac |
41367582 |
T |
|
| Q |
378 |
aacaaacattatt |
390 |
Q |
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| T |
41367581 |
aacaaacattatt |
41367569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 44281739 - 44281519
Alignment:
| Q |
4 |
gtcattgttgaaaatgctatcgcgagagttttgaacatagtcttcatgataaatggaaaaatgtaacaaattaaatttgaagaagnnnnnnngtta-ttt |
102 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||| || |||||| |||||| ||||| ||| | | || || |||| ||| |
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| T |
44281739 |
gtcattgttgaaaatgctatcgcaagagttttgaacatagtctgcacaataaatagaaaaaattaacagatttagtaccaaaaa--aaaaatgttacttt |
44281642 |
T |
|
| Q |
103 |
aagtttgagaaaatttatatcaagttggcaatagaacaaaaaccatttctcttcttagttcttgcttgtaaccaagctcattgattctcttctctgctta |
202 |
Q |
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| |||||||| ||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
44281641 |
atttttgagaattttttgatcaagatggcaaaagaacaaaaaccatttctcttcttagttcttgcttgtaaccaagctcattgagtctcttctctgctga |
44281542 |
T |
|
| Q |
203 |
atccacagcagtgttttctgtca |
225 |
Q |
| |
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||||| ||| |||||||||||| |
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|
| T |
44281541 |
atccatagctatgttttctgtca |
44281519 |
T |
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