View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_low_15 (Length: 397)
Name: NF20174_low_15
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 36753535 - 36753166
Alignment:
| Q |
17 |
cagcctgagccatgataggattgctagcatcattaagaggtgtgagacacattctcttactagatttacccgacccaacaatttcggattcccattcagc |
116 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36753535 |
cagcctgagccatgataggattgatagcatcattaagaggtgtgagacacattctcttactagatttacccgacccaacaatttcggattcccattcagc |
36753436 |
T |
|
| Q |
117 |
atcaacgggaggcttcaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgatgagaaaccctcttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36753435 |
atcaacgggaggcttcaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgatgagaaaccctcttc |
36753336 |
T |
|
| Q |
217 |
caatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcatttttggtctcctcacttatctccactctcttaaatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36753335 |
caatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcattttttgtctcctcacttatctccactctcttaaatt |
36753236 |
T |
|
| Q |
317 |
ttgtattactcatgccaattcgatagttcccacgaatgaaacacctcgcacacaacgtcctattattctt |
386 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36753235 |
ttgtattactcataccaattcgatagttcccacgaatgaaacacctcgcacacaacttcctattattctt |
36753166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 98 - 386
Target Start/End: Complemental strand, 19123788 - 19123500
Alignment:
| Q |
98 |
tttcggattcccattcagcatcaacgggaggcttcaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaac |
197 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19123788 |
tttcggattcacattcagcatcaacgggaggctttaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaac |
19123689 |
T |
|
| Q |
198 |
ttgatgagaaaccctcttccaatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcatttttggtctcctcactt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| |
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| T |
19123688 |
ttgatgagaaaccctcttccaatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattctttttttgtctcctcgctt |
19123589 |
T |
|
| Q |
298 |
atctccactctcttaaattttgtattactcatgccaattcgatagttcccacgaatgaaacacctcgcacacaacgtcctattattctt |
386 |
Q |
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|||||||||||||| |||| |||||||||||| |||||||||||||| |||| ||| ||||||||| ||||||||||| |||||||||| |
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| T |
19123588 |
atctccactctcttgaattctgtattactcataccaattcgatagtttccacaaataaaacacctcacacacaacgtcatattattctt |
19123500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 133 - 385
Target Start/End: Original strand, 54292881 - 54293133
Alignment:
| Q |
133 |
aactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgatgagaaaccctcttccaatcatccccgaaat |
232 |
Q |
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|||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
54292881 |
aactgatcaccaaaaggaagctctaaaaaacgagcaacgcattccttgtcggtcctaccaacaacttgatgagcaaccctcttccaatcatcaccgaaat |
54292980 |
T |
|
| Q |
233 |
ttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcatttttggtctcctcacttatctccactctcttaaattttgtattactcatgcc |
332 |
Q |
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| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||||||||| || |
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| T |
54292981 |
tcgtaatagcttcaagaagattcagtgtttccttctcagtccattcatttttcgtctcctcgcttatctccactctcttgaattctgtattactcatacc |
54293080 |
T |
|
| Q |
333 |
aattcgatagttcccacgaatgaaacacctcgcacacaacgtcctattattct |
385 |
Q |
| |
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||||||||| || |||||||| ||||||||||||||||||||| ||||||||| |
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| T |
54293081 |
aattcgataatttccacgaataaaacacctcgcacacaacgtcatattattct |
54293133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 54292711 - 54292831
Alignment:
| Q |
20 |
cctgagccatgataggattgctagcatcattaagaggtgtgagacacattctcttactagatttacccgacccaacaatttcggattcccattcagcatc |
119 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||| | |
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| T |
54292711 |
cctgagccatgataggattgctagcatccgcaagaggtgtgagacacattctcttactagatttatccgacggaacagtttcggattcacattcagcagc |
54292810 |
T |
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| Q |
120 |
aacgggaggcttcaactgatc |
140 |
Q |
| |
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||||||||||||||||||||| |
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| T |
54292811 |
aacgggaggcttcaactgatc |
54292831 |
T |
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