View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_low_19 (Length: 351)
Name: NF20174_low_19
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 31998877 - 31999193
Alignment:
| Q |
1 |
actatctgaacgatgaggacgtggatcagagtttctacttatagaggataacatcaatcatcattagaattttagacgatttttaaatatagttgtttta |
100 |
Q |
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| T |
31998877 |
actatctgaacgatgaggacgtggatcagagtttctacttatagaggataacatcgatcatcattagaattttagacgatttttaaatatagttgtttta |
31998976 |
T |
|
| Q |
101 |
caagaggaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaacatcacaataaagatgagaaattgcattgactgcctagaaaactc |
200 |
Q |
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| T |
31998977 |
caagaggaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaacatcacaataaagatgagaaattgcattgactgcctagaaaactc |
31999076 |
T |
|
| Q |
201 |
cacacaagagttgttacataaaccaattaggatcctacatgtaacaaggatagcgcctacttccgtctaatcctgagagtgtctattaaactggtctaca |
300 |
Q |
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| T |
31999077 |
cacacaagagttgttacataaaccaattaggctcctacatgcaacaagaatagcgcctacttccgtctaatcccgagagtgtctattaaactggtctaca |
31999176 |
T |
|
| Q |
301 |
accaacttgagtccatg |
317 |
Q |
| |
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| T |
31999177 |
accaacttgagtccatg |
31999193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 17231961 - 17231882
Alignment:
| Q |
96 |
ttttacaagaggaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaacatcacaataaagatgagaa |
175 |
Q |
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| T |
17231961 |
ttttacaagaggaaaactaattcctatcattgatgatcaagttattaatatatgttggaatatcataataaagatgagaa |
17231882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 30612429 - 30612355
Alignment:
| Q |
235 |
ctacatgtaacaaggatagcgcctacttccgtctaatcctgagagtgtctattaaactggtctacaaccaacttg |
309 |
Q |
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|||||| || |||| ||||||||||||| ||| | ||| |||||||||| |||||| |||||||| ||||||||| |
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| T |
30612429 |
ctacatttagcaagaatagcgcctactttcgtgttatcttgagagtgtcgattaaattggtctacgaccaacttg |
30612355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 44773620 - 44773688
Alignment:
| Q |
107 |
gaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaacatcacaataaagatgagaa |
175 |
Q |
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| T |
44773620 |
gaaaactaattcatttcattaaaaatcaaacggtcaatacatgatagaacatcataataaatatgagaa |
44773688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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