View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20174_low_20 (Length: 348)

Name: NF20174_low_20
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20174_low_20
NF20174_low_20
[»] chr7 (20 HSPs)
chr7 (87-331)||(43057410-43057654)
chr7 (16-331)||(151969-152283)
chr7 (87-331)||(35089835-35090079)
chr7 (87-331)||(30110914-30111158)
chr7 (87-331)||(27418371-27418615)
chr7 (103-331)||(40097205-40097434)
chr7 (179-331)||(47914878-47915030)
chr7 (104-331)||(39301002-39301218)
chr7 (87-182)||(47914058-47914153)
chr7 (16-67)||(43057333-43057384)
chr7 (216-331)||(24939509-24939623)
chr7 (16-67)||(27418299-27418350)
chr7 (16-67)||(30111182-30111233)
chr7 (212-331)||(31494350-31494469)
chr7 (16-67)||(33474863-33474914)
chr7 (16-67)||(47913988-47914039)
chr7 (178-286)||(46037170-46037278)
chr7 (178-262)||(42678013-42678097)
chr7 (16-67)||(12253075-12253126)
chr7 (279-331)||(47031356-47031408)
[»] chr3 (29 HSPs)
chr3 (16-331)||(24150491-24150805)
chr3 (87-331)||(35731043-35731287)
chr3 (87-331)||(38629529-38629773)
chr3 (16-331)||(30588950-30589267)
chr3 (87-331)||(36054736-36054980)
chr3 (87-331)||(50900176-50900420)
chr3 (87-331)||(26293296-26293540)
chr3 (103-331)||(46251948-46252176)
chr3 (103-331)||(13662659-13662887)
chr3 (16-271)||(26005517-26005768)
chr3 (149-331)||(26005774-26005956)
chr3 (87-331)||(19551887-19552121)
chr3 (104-331)||(27593263-27593490)
chr3 (116-331)||(26555925-26556123)
chr3 (104-331)||(39338046-39338270)
chr3 (103-315)||(36786098-36786309)
chr3 (110-331)||(52023955-52024172)
chr3 (142-331)||(38682536-38682728)
chr3 (257-331)||(53183972-53184046)
chr3 (16-67)||(36054661-36054712)
chr3 (233-330)||(6783976-6784073)
chr3 (16-65)||(26293227-26293276)
chr3 (16-67)||(19551821-19551871)
chr3 (16-67)||(23697352-23697403)
chr3 (16-67)||(23715808-23715859)
chr3 (16-67)||(23734264-23734315)
chr3 (16-67)||(23753928-23753979)
chr3 (16-66)||(38629459-38629509)
chr3 (16-67)||(50900092-50900143)
[»] chr8 (36 HSPs)
chr8 (87-331)||(41386599-41386843)
chr8 (87-331)||(7148151-7148395)
chr8 (16-331)||(40264939-40265254)
chr8 (87-331)||(2112902-2113146)
chr8 (87-331)||(29260005-29260249)
chr8 (87-331)||(4655158-4655402)
chr8 (87-331)||(43605093-43605337)
chr8 (87-331)||(42275083-42275328)
chr8 (16-321)||(41965459-41965761)
chr8 (120-331)||(10802533-10802744)
chr8 (103-331)||(28619954-28620183)
chr8 (137-323)||(9457662-9457848)
chr8 (103-331)||(4302551-4302781)
chr8 (104-315)||(37567118-37567329)
chr8 (131-331)||(8502743-8502943)
chr8 (104-331)||(30382420-30382647)
chr8 (153-331)||(9209147-9209325)
chr8 (131-331)||(35142153-35142353)
chr8 (247-331)||(1605902-1605986)
chr8 (87-164)||(41965327-41965404)
chr8 (249-330)||(40013363-40013444)
chr8 (103-183)||(40013242-40013324)
chr8 (16-67)||(2113171-2113222)
chr8 (16-67)||(29259933-29259984)
chr8 (16-67)||(43605026-43605077)
chr8 (16-67)||(9457887-9457938)
chr8 (16-67)||(41386525-41386576)
chr8 (16-67)||(41965238-41965289)
chr8 (178-324)||(24296472-24296618)
chr8 (16-66)||(42275351-42275401)
chr8 (29-66)||(4655421-4655458)
chr8 (233-301)||(23185838-23185906)
chr8 (16-67)||(7148415-7148466)
chr8 (16-67)||(43489260-43489311)
chr8 (16-54)||(10796029-10796067)
chr8 (87-123)||(9457832-9457868)
[»] chr2 (19 HSPs)
chr2 (87-331)||(29941056-29941300)
chr2 (89-331)||(6289232-6289474)
chr2 (87-331)||(45547042-45547286)
chr2 (104-330)||(11534947-11535173)
chr2 (104-323)||(24193232-24193451)
chr2 (103-331)||(20157502-20157730)
chr2 (103-331)||(34028677-34028906)
chr2 (109-331)||(11998169-11998390)
chr2 (123-331)||(24193660-24193875)
chr2 (162-331)||(45485472-45485631)
chr2 (178-331)||(38822753-38822907)
chr2 (16-67)||(6289165-6289216)
chr2 (16-67)||(7487813-7487864)
chr2 (16-67)||(29941326-29941377)
chr2 (17-67)||(21736289-21736339)
chr2 (178-286)||(18176289-18176397)
chr2 (188-286)||(15284357-15284456)
chr2 (28-67)||(35172337-35172376)
chr2 (185-225)||(43022654-43022694)
[»] scaffold0016 (2 HSPs)
scaffold0016 (87-331)||(81511-81755)
scaffold0016 (16-66)||(81440-81490)
[»] chr5 (9 HSPs)
chr5 (87-331)||(40410701-40410945)
chr5 (104-330)||(6828537-6828764)
chr5 (123-331)||(17518539-17518748)
chr5 (123-331)||(10571222-10571430)
chr5 (178-286)||(2276025-2276133)
chr5 (212-331)||(6902525-6902644)
chr5 (16-67)||(40410970-40411021)
chr5 (16-67)||(3604127-3604178)
chr5 (16-67)||(13950454-13950505)
[»] chr4 (26 HSPs)
chr4 (87-331)||(42218175-42218419)
chr4 (87-331)||(8583734-8583978)
chr4 (87-331)||(44929988-44930230)
chr4 (87-331)||(3435692-3435930)
chr4 (122-331)||(8880555-8880764)
chr4 (104-331)||(52109517-52109744)
chr4 (103-331)||(25935898-25936127)
chr4 (107-331)||(45332777-45333001)
chr4 (109-331)||(47685255-47685477)
chr4 (103-315)||(26336195-26336407)
chr4 (107-331)||(45340467-45340691)
chr4 (107-331)||(42720830-42721055)
chr4 (123-331)||(33449944-33450152)
chr4 (104-331)||(54509825-54510050)
chr4 (104-331)||(40143887-40144098)
chr4 (87-265)||(7820239-7820402)
chr4 (16-67)||(7820425-7820476)
chr4 (16-67)||(42315248-42315299)
chr4 (16-67)||(44930255-44930306)
chr4 (16-67)||(56397784-56397835)
chr4 (16-65)||(3435631-3435680)
chr4 (247-331)||(5117072-5117156)
chr4 (16-67)||(42218102-42218153)
chr4 (178-286)||(38230928-38231036)
chr4 (16-67)||(8583666-8583717)
chr4 (298-331)||(7820207-7820240)
[»] chr1 (19 HSPs)
chr1 (87-331)||(26882555-26882799)
chr1 (87-331)||(45318571-45318815)
chr1 (87-331)||(52705504-52705748)
chr1 (103-331)||(1928149-1928377)
chr1 (104-331)||(36402358-36402585)
chr1 (107-331)||(29208866-29209090)
chr1 (104-331)||(33243060-33243283)
chr1 (104-331)||(33263233-33263456)
chr1 (104-331)||(10896911-10897138)
chr1 (137-330)||(45534918-45535089)
chr1 (233-315)||(9831417-9831499)
chr1 (149-226)||(9831782-9831859)
chr1 (171-331)||(9191242-9191402)
chr1 (16-67)||(45318842-45318893)
chr1 (16-65)||(26882481-26882530)
chr1 (16-67)||(52705766-52705817)
chr1 (178-286)||(19007400-19007508)
chr1 (178-286)||(48194746-48194854)
chr1 (178-286)||(48203504-48203612)
[»] chr6 (15 HSPs)
chr6 (87-331)||(6476442-6476686)
chr6 (137-323)||(29834064-29834250)
chr6 (137-323)||(29865498-29865684)
chr6 (111-323)||(3110038-3110250)
chr6 (103-331)||(30877963-30878191)
chr6 (104-331)||(10643758-10643987)
chr6 (187-331)||(7858203-7858347)
chr6 (16-67)||(6476369-6476420)
chr6 (16-67)||(29865407-29865458)
chr6 (178-286)||(709070-709178)
chr6 (178-286)||(5957285-5957393)
chr6 (178-286)||(7100320-7100428)
chr6 (178-286)||(8794202-8794310)
chr6 (87-123)||(29834044-29834080)
chr6 (87-123)||(29865478-29865514)
[»] scaffold0153 (2 HSPs)
scaffold0153 (87-324)||(34543-34780)
scaffold0153 (16-66)||(34472-34522)
[»] scaffold0237 (3 HSPs)
scaffold0237 (137-323)||(21192-21378)
scaffold0237 (16-67)||(21102-21153)
scaffold0237 (87-123)||(21172-21208)
[»] scaffold0202 (1 HSPs)
scaffold0202 (103-323)||(16303-16507)
[»] scaffold0472 (1 HSPs)
scaffold0472 (178-262)||(1705-1789)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 43057410 - 43057654
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  43057410 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaa 43057509  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43057510 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 43057609  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||||||||||||||||||||||||||||||||| ||||||    
T  43057610 ctggatttcattggactcattaaaaaatcttgaaaatcctaattg 43057654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 152283 - 151969
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacgcnnnnnnnnnnnnnnnnnntttggaagagtattacaaaatctcaaggc 115  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||                   ||||| ||||||||||||||||| |||||    
T  152283 atatataacctgccattgttacagtagaacagaaaagaatttggaagaaacg-taaaaaaaaaaaaaagattttggtagagtattacaaaatctaaaggc 152185  T
Q  116 tatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatc 215  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  152184 tatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatc 152085  T
Q  216 cattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatc 315  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  152084 cattaaaatccgtagagttttgaataccattagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatc 151985  T
Q  316 ttgaaaatcttaattg 331  Q
    ||||||||| ||||||    
T  151984 ttgaaaatcctaattg 151969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 35089835 - 35090079
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||    
T  35089835 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggttaggtgtgagattgttagtaggtacattttataccaaacaa 35089934  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35089935 tctcacaaaattcattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 35090034  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || |||||||||||||||||||||||||| |||||||| ||||||    
T  35090035 cttgatttcattggactcattaaaaaatcatgaaaatcctaattg 35090079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 87 - 331
Target Start/End: Complemental strand, 30111158 - 30110914
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || |||||||||||||| ||| ||||||||| |||||||||    
T  30111158 tttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaaacaa 30111059  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||    
T  30111058 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataatagcagacaatttttaagttatgcaaaatctcaattgaatacca 30110959  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||||||||||||||||||||||||||||||||| ||||||    
T  30110958 ctggatttcattggactcattaaaaaatcttgaaaatcctaattg 30110914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 27418371 - 27418615
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    |||||||||||||||||||||||||||||| |||||||||||   ||||||||||||| || |||||||||||||| ||| ||||||||| |||||||||    
T  27418371 tttggaagagtattacaaaatctcaaggctttgtgtgggagaccaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaaacaa 27418470  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||    
T  27418471 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgattactagcagacaatttttaagttatgcaaaatctcaattgaatacca 27418570  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||||||||||||||||||||||||||||||||| ||||||    
T  27418571 ctggatttcattggactcattaaaaaatcttgaaaatcctaattg 27418615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 103 - 331
Target Start/End: Complemental strand, 40097434 - 40097205
Alignment:
Q  103 aaaatctcaaggctatgtgtgggagatagaaaa-gtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccat 201  Q
    ||||||||||| |||||||||||||| | |||| ||||||| |||| |||||||||||||||||| | ||||||| | |||| | |||||||||||||||    
T  40097434 aaaatctcaagactatgtgtgggagacaaaaaaagtctcaaagctaggtgtgagattgttagtagatgcattttacattaaaaagtctcacaaaatccat 40097335  T
Q  202 tattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattgga 301  Q
    || ||| |||||||||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||  |||| ||||||    
T  40097334 tagtcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgcaaaatctgaattgaataccactgaattttattgga 40097235  T
Q  302 ctcattaaaaaatcttgaaaatcttaattg 331  Q
    ||||||||||||| ||||||||| ||||||    
T  40097234 ctcattaaaaaattttgaaaatcataattg 40097205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 179 - 331
Target Start/End: Original strand, 47914878 - 47915030
Alignment:
Q  179 ctaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaatt 278  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  47914878 ctaaacaatctcacaaaatccattactcacaacaatccataaaaatctgtagagttttgaatactagcagacaatttttaagttatgcaaaatctcaatt 47914977  T
Q  279 gaataccactagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  47914978 gaataccactggatttcattggactcattaaaaaatcttgaaaatcctaattg 47915030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 104 - 331
Target Start/End: Original strand, 39301002 - 39301218
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaa-gtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatt 202  Q
    ||||||||||||||| ||||||||| | |||| ||||||||| || |||||||||||||||||||||||||||| | ||||            |||||||    
T  39301002 aaatctcaaggctatatgtgggagacaaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacattaaa------------atccatt 39301089  T
Q  203 attcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggac 302  Q
    | ||||||||||| |||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || || |||||||    
T  39301090 actcacaacaatctattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccactggaatttattggac 39301189  T
Q  303 tcattaaaaaatcttgaaaatcttaattg 331  Q
    ||||||||||||  |||||||| ||||||    
T  39301190 tcattaaaaaattctgaaaatcctaattg 39301218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 47914058 - 47914153
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  47914058 tttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 47914153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 43057333 - 43057384
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  43057333 atatataacctgccattgttacagtagaacagaaaagaatttggaagaaacg 43057384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 331
Target Start/End: Original strand, 24939509 - 24939623
Alignment:
Q  216 cattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatc 315  Q
    ||||||||||  || | ||||||||||||  |||| |||||||||||||| ||||| | ||||||||||||  ||||||  |||||||| ||||||| ||    
T  24939509 cattaaaatctataaatttttgaataccaa-agactatttttaagttatgaaaaattttaattgaataccatcagattttgttggactctttaaaaattc 24939607  T
Q  316 ttgaaaatcttaattg 331  Q
     |||||||| ||||||    
T  24939608 atgaaaatcataattg 24939623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 27418299 - 27418350
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  27418299 atatataatctgtcattgttatagtagaacagaaaagaatttggaagaaacg 27418350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 30111233 - 30111182
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||| ||| |||| ||||||||||||||||||||||||||||||||||    
T  30111233 atatataatctgccattgttacagtagaacagaaaagaatttggaagaaacg 30111182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 31494469 - 31494350
Alignment:
Q  212 aatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaa 311  Q
    ||||||||||||||  || | |||| |||||||  |||||||||||||||| |  |||||||  |||||||||||| ||||||  || ||||| ||||||    
T  31494469 aatccattaaaatcaatacattttttaataccaagagacaatttttaagttgtaaaaaatcttgattgaataccaccagattttgtttgactctttaaaa 31494370  T
Q  312 aatcttgaaaatcttaattg 331  Q
    |||| | |||||| ||||||    
T  31494369 aatcattaaaatcctaattg 31494350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 33474914 - 33474863
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  33474914 atatataacatgccattgttacagtagaacagaaaagaatttggaagaaacg 33474863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 47913988 - 47914039
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||  |||| ||||||||||||||||||||||||||||||||||    
T  47913988 atatataacctaccattgttacagtagaacagaaaagaatttggaagaaacg 47914039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 46037170 - 46037278
Alignment:
Q  178 actaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 277  Q
    |||||| | ||||||||||||||||     ||| ||||||| ||||||  |||| |||||||||||| |||||||||  ||||| |||  ||||||||||    
T  46037170 actaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaatctcaat 46037269  T
Q  278 tgaatacca 286  Q
    |||||||||    
T  46037270 tgaatacca 46037278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 42678013 - 42678097
Alignment:
Q  178 actaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagtt 262  Q
    |||||| | ||||| |||||||||| | || || |||||||||||||| | ||| |||||||||||| |||||| ||| ||||||    
T  42678013 actaaaaagtctcataaaatccattctacaaaagaatccattaaaatctgcagatttttgaataccaatagacattttataagtt 42678097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 12253075 - 12253126
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    ||||||||| || |||| ||| ||||||||||||||||||||| ||||||||    
T  12253075 atatataacttgccattgttatagtagaacagaaaagaatttgaaagaaacg 12253126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 47031408 - 47031356
Alignment:
Q  279 gaataccactagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||| |||||  ||| |||| ||||||| ||||||||||||||||||    
T  47031408 gaataccactggatttggttgaactctttaaaaattcttgaaaatcttaattg 47031356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 24150491 - 24150805
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacgcnnnnnnnnnnnnnnnnnntttggaagagtattacaaaatctcaaggc 115  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||    
T  24150491 atatataacctgccatttttacagtagaacagaaaagaatttggaagaaacg-taaaaaaaaaaaaaagaatttggaagagtattacaaaatctcaaggc 24150589  T
Q  116 tatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatc 215  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  24150590 tatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatc 24150689  T
Q  216 cattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatc 315  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24150690 cattaaaatccgtagagttttgaataccagtggacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatc 24150789  T
Q  316 ttgaaaatcttaattg 331  Q
    || |||||| ||||||    
T  24150790 ttcaaaatcctaattg 24150805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 87 - 331
Target Start/End: Complemental strand, 35731287 - 35731043
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||||||| |||||||||    
T  35731287 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaatgctaggtgtgagattgttagcaggtgcattttacactaaacaa 35731188  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35731187 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 35731088  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||| ||||||||||||||||||||||||||||||||||||    
T  35731087 ctggatttgattggactcattaaaaaatcttgaaaatcttaattg 35731043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 38629529 - 38629773
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  38629529 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaaatctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaa 38629628  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38629629 tctcacaaaatccattactcacaacaatccattaaaatccgtatagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccg 38629728  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    ||  ||||||||| |||||||||||||||||||||||| ||||||    
T  38629729 ctgaatttcattgaactcattaaaaaatcttgaaaatcctaattg 38629773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 30589267 - 30588950
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacgcnnnnnnnnnnnnnnnnnn-tttggaagagtattacaaaatctcaagg 114  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||| ||||    
T  30589267 atatataacctgtcattgttacagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaaaaaaatgaatttggaagagtattacaaaatctgaagg 30589168  T
Q  115 ctatgtgtgggagatagaaaa-gtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaa 213  Q
    ||||||||||| |||| |||| ||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  30589167 ctatgtgtgggtgataaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaa 30589068  T
Q  214 tccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||    
T  30589067 tccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgctaaatctcaattgaataccactgaatttcattggactcattaaaaaa 30588968  T
Q  314 tcttgaaaatcttaattg 331  Q
    ||||||||||| ||||||    
T  30588967 tcttgaaaatcctaattg 30588950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 36054736 - 36054980
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || |||||||||||||| ||| ||||||||| |||||||||    
T  36054736 tttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaaacaa 36054835  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||    
T  36054836 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaaaactagcagacaatttttaagttatgcaaaatctcaattgaatacca 36054935  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||||||||||||||||||||||||||||||||| ||||||    
T  36054936 ctggatttcattggactcattaaaaaatcttgaaaatcctaattg 36054980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 50900176 - 50900420
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | |||||||    
T  50900176 tttggaagagtattacaaaatctcaaggaaatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtatgtacattttacattaaacaa 50900275  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50900276 tctcacaaaatccattactcacaacaatccattaaaatctctagagttttgaataccagtagacaatttttaagttatgcaaaatctcaatcgaatacca 50900375  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || |||||||||||||||||||||||| |||||||||| ||||||    
T  50900376 ctggatttcattggactcattaaaaaagcttgaaaatcctaattg 50900420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 26293296 - 26293540
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  || ||||||| |||||||||||||||||||| |||||||||    
T  26293296 tttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaagattaggtgtgaggttgttagtaggtacattttacactaaacaa 26293395  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    || |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| ||    
T  26293396 tcacacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatactagtaaacaatttttaagttatgcaaaatctcaattaaatatca 26293495  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||    
T  26293496 ctagatttcattggactcattaaaaaatattgaaaatcctaattg 26293540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 103 - 331
Target Start/End: Original strand, 46251948 - 46252176
Alignment:
Q  103 aaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatt 202  Q
    |||||||| ||  ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46251948 aaaatctcgagcttatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccatt 46252047  T
Q  203 attcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggac 302  Q
    | ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46252048 actcacaacaatccattaaaatccgtaaagttttgaataccagcagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggac 46252147  T
Q  303 tcattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||||||||||||| ||||||    
T  46252148 tcattaaaaaatcttgaaaatcctaattg 46252176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 103 - 331
Target Start/End: Complemental strand, 13662887 - 13662659
Alignment:
Q  103 aaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatt 202  Q
    |||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13662887 aaaatctcaaggttatgtgtgggaggcagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccatt 13662788  T
Q  203 attcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggac 302  Q
    | ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||    
T  13662787 actcacaacaatccattaaaacccgtagtgttttgaatacgagtagacaatttttaagttgtgcgaaatctcaattgaataccactggatttcattggac 13662688  T
Q  303 tcattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||||||||||||| ||||||    
T  13662687 tcattaaaaaatcttgaaaatcctaattg 13662659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 26005517 - 26005768
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacgcnnnnnnnnnnnnnnnnnntttggaagagtattacaaaatctcaaggc 115  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||    
T  26005517 atatataacatgtcattgttacagtagaacagaaaagaatttggaagaaacg----taaaaaaaaaatgaatttggaagagtattacaaaatctcaaggc 26005612  T
Q  116 tatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatc 215  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  26005613 tatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatc 26005712  T
Q  216 cattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaat 271  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26005713 cattaaaatccgtagagttttgaataccaatagacaatttttaagttatgcaaaat 26005768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 149 - 331
Target Start/End: Original strand, 26005774 - 26005956
Alignment:
Q  149 gtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtag 248  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  26005774 gtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatccatagagttttgaataccagtag 26005873  T
Q  249 acaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  26005874 acaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatcttgaaaatcctaattg 26005956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 19551887 - 19552121
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  19551887 tttggaagagtattacaaaatctcaaggctatatgtgggagaaagaaaagtctcaaggctaggtgtgagattgttattaggtacattttacactaaacaa 19551986  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    | |||||||||          |||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||    
T  19551987 tttcacaaaat----------caacaatcaattaaaatctgtagagttttgaataccactagacaatttttaagttatgcaaaatcttaattaaatacca 19552076  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || |||||||||| |||| ||||||||||||||||||| ||||||    
T  19552077 ctggatttcattgaactcgttaaaaaatcttgaaaatcctaattg 19552121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 104 - 331
Target Start/End: Complemental strand, 27593490 - 27593263
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatta 203  Q
    ||||||||| ||||||||| ||||| | ||||||||||||| || |||||||||||||||||||||||||||| |||||| | |||||||||||||||||    
T  27593490 aaatctcaaagctatgtgttggagacaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 27593391  T
Q  204 ttcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggact 303  Q
     |||||||||||||||||||||| || | |||||||||||| ||||||||||||||| | ||||||| |||||||||||||||||  |||| ||||||||    
T  27593390 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagatgtgcaaaacctcaattgaataccactgaattttattggact 27593291  T
Q  304 cattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||| |||||||| ||||||    
T  27593290 cattaaaaaatcatgaaaatcctaattg 27593263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 116 - 331
Target Start/End: Complemental strand, 26556123 - 26555925
Alignment:
Q  116 tatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatc 215  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||                
T  26556123 tatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccatta------------ 26556036  T
Q  216 cattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatc 315  Q
         ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26556035 -----aaatccgtagagttttgaatacccgtagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatc 26555941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 104 - 331
Target Start/End: Original strand, 39338046 - 39338270
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatta 203  Q
    |||||| |||||||| ||||||||| | ||||||||||||| || |||||||||||||||||||||||||||| |||||| | |||||  ||||||||||    
T  39338046 aaatctgaaggctatttgtgggagaca-aaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaaaagtctca--aaatccatta 39338142  T
Q  204 ttcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggact 303  Q
     |||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  39338143 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccactggattttattggact 39338242  T
Q  304 cattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||| | |||||| ||||||    
T  39338243 cattaaaaaatcctaaaaatcctaattg 39338270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 103 - 315
Target Start/End: Complemental strand, 36786309 - 36786098
Alignment:
Q  103 aaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatt 202  Q
    ||||||||||||||||||||| |||| | |||||||||||||| | ||||| |||||||||||||||||||||| |||||| | ||||| ||||||||||    
T  36786309 aaaatctcaaggctatgtgtgagagacaaaaaagtctcaaggc-aggtgtgtgattgttagtaggtacattttacactaaaaagtctcataaaatccatt 36786211  T
Q  203 attcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggac 302  Q
    | |||||||||| ||||||||||| || | |||||||||||| ||||||| ||| ||||| ||||||||||||||||||||||||| ||||| |||||||    
T  36786210 actcacaacaattcattaaaatccttacaattttgaataccaatagacaagtttaaagttttgcaaaatctcaattgaataccactggattttattggac 36786111  T
Q  303 tcattaaaaaatc 315  Q
    |||||||||||||    
T  36786110 tcattaaaaaatc 36786098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 110 - 331
Target Start/End: Original strand, 52023955 - 52024172
Alignment:
Q  110 caaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcaca 209  Q
    |||| |||||||||||||| | ||||||||    | || |||||||||||||| |||||||||||||||||||| | ||||  ||||||||||| |||||    
T  52023955 caagtctatgtgtgggagacaaaaaagtct----gttaggtgtgagattgttactaggtacattttatactaaaaagtctcttaaaatccattactcaca 52024050  T
Q  210 acaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaa 309  Q
    |||||||||||||||||||||| |||||| ||| | |||||||||||||| || ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  52024051 acaatccattaaaatccgtagaattttgattactaatagacaatttttaaattgtgcaaaatctcaattgaataccactggattttattggactcattaa 52024150  T
Q  310 aaaatcttgaaaatcttaattg 331  Q
    ||||||||||||||| ||||||    
T  52024151 aaaatcttgaaaatcataattg 52024172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 142 - 331
Target Start/End: Complemental strand, 38682728 - 38682536
Alignment:
Q  142 aggctaagtgtgagattgttagtaggtac---attttatactaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttga 238  Q
    |||||| ||||||||||||||||||||||   ||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||| ||||||    
T  38682728 aggctaggtgtgagattgttagtaggtactacattttatactaaaaaatctctcaaaatccattactcacaacaatccattaaaatccgtagaattttga 38682629  T
Q  239 ataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcatt-aaaaaatcttgaaaatcttaattg 331  Q
    |||||| || |||||||||||||| |||||||||||||||||||| ||||  | || |||||||||||| ||||||||||||||||| ||||||    
T  38682628 ataccaata-acaatttttaagttgtgcaaaatctcaattgaatatcactgaagtttattggactcattaaaaaaatcttgaaaatcataattg 38682536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 53183972 - 53184046
Alignment:
Q  257 taagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||    
T  53183972 taagttatgcaaaatctcaattgaataccaccagattttattggactcattaaaaaatcttgaaaatcctaattg 53184046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 36054661 - 36054712
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||| ||| |||| ||||||||||||||||||||||||||||||||||    
T  36054661 atatataatctgccattgttacagtagaacagaaaagaatttggaagaaacg 36054712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 6783976 - 6784073
Alignment:
Q  233 ttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaatcttaatt 330  Q
    ||||||||| ||  |||||||||||||||| || |||||||  || |||||||||   ||||  |||||||| |||||||||| ||||||||||||||    
T  6783976 ttttgaatatcaagagacaatttttaagttgtggaaaatcttgatggaataccaccgaatttggttggactctttaaaaaatcctgaaaatcttaatt 6784073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 26293227 - 26293276
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaa 65  Q
    |||||||||||| |||| ||||||||||| ||||||||||||||||||||    
T  26293227 atatataacctgccattgttacagtagaatagaaaagaatttggaagaaa 26293276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 19551821 - 19551871
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||| |||| | ||||||||||||||||||||||||||||||||    
T  19551821 atatataacctgccattgt-acagtagaacagaaaagaatttggaagaaacg 19551871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 23697403 - 23697352
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||| |||| ||||| ||||||| ||||||||||||||||||||    
T  23697403 atatataacctgccattgttacaatagaacataaaagaatttggaagaaacg 23697352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 23715859 - 23715808
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||| |||| ||||| ||||||| ||||||||||||||||||||    
T  23715859 atatataacctgccattgttacaatagaacataaaagaatttggaagaaacg 23715808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 23734315 - 23734264
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||| |||| ||||| ||||||| ||||||||||||||||||||    
T  23734315 atatataacctgccattgttacaatagaacataaaagaatttggaagaaacg 23734264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 23753979 - 23753928
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||| |||| ||||| ||||| ||||||||||||||||||||||    
T  23753979 atatataacctgccattgttacaatagaatagaaaagaatttggaagaaacg 23753928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 38629459 - 38629509
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaac 66  Q
    |||||||| ||| |||| ||||||||||||||||||||||||| |||||||    
T  38629459 atatataatctgccattgttacagtagaacagaaaagaatttgaaagaaac 38629509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 50900092 - 50900143
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    ||||||||| || |||| ||| |||| |||||||||||||||||||||||||    
T  50900092 atatataacatgccattgttagagtataacagaaaagaatttggaagaaacg 50900143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 41386599 - 41386843
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  41386599 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaa 41386698  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41386699 tctcataaaatccattactcacaacaatccattaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaatacca 41386798  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||||||||||||||||||||||||||||||||| ||||||    
T  41386799 ctggatttcattggactcattaaaaaatcttgaaaatcctaattg 41386843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 87 - 331
Target Start/End: Complemental strand, 7148395 - 7148151
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  7148395 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaa 7148296  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  7148295 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatgccagtagacaatttctaagttatgcaaaatctcaattgaatacca 7148196  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||||||||||||| ||||||||||||||||||| ||||||    
T  7148195 ctggatttcattggactccttaaaaaatcttgaaaatcctaattg 7148151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 40264939 - 40265254
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacgcnnnnnnnnnnnnnnnnnntttggaagagtattacaaaatctcaaggc 115  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||                   ||||| ||||||||||||||||| |||||    
T  40264939 atatataacctgccattgttacagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaaaaaaagattttggtagagtattacaaaatctaaaggc 40265038  T
Q  116 tatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatc 215  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  40265039 tacgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatc 40265138  T
Q  216 cattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatc 315  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40265139 cattaaaatccatagagttttgaataccattagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatc 40265238  T
Q  316 ttgaaaatcttaattg 331  Q
    ||||||||| ||||||    
T  40265239 ttgaaaatcctaattg 40265254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 87 - 331
Target Start/End: Complemental strand, 2113146 - 2112902
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||| ||||||||||||||| |||||||||    
T  2113146 tttggaagagtattacaaaatctcaaggctatatgtgggagacagaaaagtctcaatgctaggtgtgagattgtcagtaggtacattttacactaaacaa 2113047  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2113046 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcgaaatctcaattgaatacca 2112947  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||||||||||||||||||||||||||||||||| ||||||    
T  2112946 ctggatttcattggactcattaaaaaatcttgaaaatcctaattg 2112902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 29260005 - 29260249
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| |||||||||    
T  29260005 tttggaatagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggttaggtgtgagattgttagtacgtacattttacactaaacaa 29260104  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29260105 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 29260204  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||||||||||||| ||||||||||| ||||||| ||||||    
T  29260205 ctggatttcattggactcgttaaaaaatctcgaaaatcctaattg 29260249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 87 - 331
Target Start/End: Complemental strand, 4655402 - 4655158
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  4655402 tttggaagagtatcacaaaatctcaaggctatgtgtgagagatagaaaagtctcaaggctaggtgtgagattgttagtatgtacattttacactaaacaa 4655303  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4655302 tctcacaaaatccattactcataacaatccattaaaatccgtagagttttgaataccggtagacaatttttaagttatgcaaaatctcaattgaatacca 4655203  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    ||  |||||||||||||||||||||||||||||||||| ||||||    
T  4655202 ctgaatttcattggactcattaaaaaatcttgaaaatcctaattg 4655158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 43605093 - 43605337
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| |||||||||| | |||||||    
T  43605093 tttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaagtacattttacattaaacaa 43605192  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||    
T  43605193 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatactagcagacaatttttaagttatgcgaaatctcaattgaatacca 43605292  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||||||||||||||||||||||||||||||||| ||||||    
T  43605293 ctggatttcattggactcattaaaaaatcttgaaaatcctaattg 43605337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 87 - 331
Target Start/End: Complemental strand, 42275328 - 42275083
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattg-ttagtaggtacattttatactaaaca 185  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  42275328 tttggaagagtattacaaaatctcaaggttatgtgtgggagacagaaaagtctcaaggctaggtgtgagattggttagtaggtacattttacactaaaca 42275229  T
Q  186 atctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 285  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42275228 atctcacaaaatccattactcacaacaatccataaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaatacc 42275129  T
Q  286 actagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
     || ||||||||| ||||||||||||||||||||||||| ||||||    
T  42275128 gctggatttcatttgactcattaaaaaatcttgaaaatcctaattg 42275083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 41965459 - 41965761
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacgcnnnnnnnnnnnnnnnnnntttggaagagtattacaaaatctcaaggc 115  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||    
T  41965459 atatataacctgccatttttacagtagaacagaaaagaatttggaagaaacg-taaaaaaaaaaaaaagaatttggaagagtattacaaaatctcaaggc 41965557  T
Q  116 tatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatc 215  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  41965558 tatgtgtgggagatagaaaagtctcaaggctaggtgcgagattgttagtaggtacattttacactaaataatctcacaaaatccattactcacaacaatc 41965657  T
Q  216 cattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatc 315  Q
    |||||||||  ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41965658 cattaaaatatgtagagttttgaataccagtagacaa--tttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatc 41965755  T
Q  316 ttgaaa 321  Q
    ||||||    
T  41965756 ttgaaa 41965761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 120 - 331
Target Start/End: Original strand, 10802533 - 10802744
Alignment:
Q  120 tgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccatt 219  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  10802533 tgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccatt 10802632  T
Q  220 aaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttga 319  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10802633 aaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatcttga 10802732  T
Q  320 aaatcttaattg 331  Q
    ||||| ||||||    
T  10802733 aaatcctaattg 10802744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 103 - 331
Target Start/End: Complemental strand, 28620183 - 28619954
Alignment:
Q  103 aaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatt 202  Q
    |||||||||||| ||||||||||||| ||||||||||||||  || ||||||||||||||||||||||||| || | |||||||||||||||| | ||||    
T  28620183 aaaatctcaaggttatgtgtgggagacagaaaagtctcaagattaggtgtgagattgttagtaggtacattgtacattaaacaatctcacaaagttcatt 28620084  T
Q  203 attcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggac 302  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||     
T  28620083 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactgaatttcattggat 28619984  T
Q  303 tcattaaaaa-atcttgaaaatcttaattg 331  Q
    |||||||||| |||||||||||| ||||||    
T  28619983 tcattaaaaatatcttgaaaatcctaattg 28619954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 137 - 323
Target Start/End: Complemental strand, 9457848 - 9457662
Alignment:
Q  137 tctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagtttt 236  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  9457848 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 9457749  T
Q  237 gaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaat 323  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9457748 gaataccgatagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatcttgaaaat 9457662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 103 - 331
Target Start/End: Original strand, 4302551 - 4302781
Alignment:
Q  103 aaaatctcaaggctatgtgtgggagatagaaaa--gtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatcca 200  Q
    |||||||||||||||||||||||||| | ||||  |||||||||||| |||||||||||||||||||||||||||| |||||| | |||| | |||||||    
T  4302551 aaaatctcaaggctatgtgtgggagacaaaaaaatgtctcaaggctaggtgtgagattgttagtaggtacattttacactaaaaagtctcgctaaatcca 4302650  T
Q  201 ttattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattgg 300  Q
    ||| |||||||||||||||||||||| || | |||||||||| | ||||||||||||||||| ||||||||||||||||||||||| |  |||| |||||    
T  4302651 ttactcacaacaatccattaaaatccttacaattttgaatactaatagacaatttttaagttgtgcaaaatctcaattgaataccattgaattttattgg 4302750  T
Q  301 actcattaaaaaatcttgaaaatcttaattg 331  Q
    ||||||||||||||| |||||||| ||||||    
T  4302751 actcattaaaaaatcctgaaaatcctaattg 4302781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 104 - 315
Target Start/End: Original strand, 37567118 - 37567329
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatta 203  Q
    |||||| |||||||||||||||||| | ||||||||||||| || |||||||||||||||||| ||||||||| |||||| |  ||||||||||||||||    
T  37567118 aaatcttaaggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaaaaagcctcacaaaatccatta 37567217  T
Q  204 ttcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggact 303  Q
     |||||||||| |||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||    
T  37567218 ctcacaacaattcattaaaatccgtacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaatactactggattttattggact 37567317  T
Q  304 cattaaaaaatc 315  Q
    ||||||||||||    
T  37567318 cattaaaaaatc 37567329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 131 - 331
Target Start/End: Complemental strand, 8502943 - 8502743
Alignment:
Q  131 gaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtag 230  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| |||||| | ||||| ||||||||||| ||||||||||||||||||||||||||    
T  8502943 gaaaagtcttaaggctatgtgtgagattgttagtaggtacattttacactaaaaagtctcataaaatccattactcacaacaatccattaaaatccgtag 8502844  T
Q  231 agttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaatcttaatt 330  Q
    | |||| ||||||| ||||||||||||||||| |||||||||| |||||||||||||  ||||| |||||||||||| |||||||||||||||| |||||    
T  8502843 aattttaaataccaatagacaatttttaagttgtgcaaaatcttaattgaataccaccggattttattggactcattcaaaaatcttgaaaatcctaatt 8502744  T
Q  331 g 331  Q
    |    
T  8502743 g 8502743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 104 - 331
Target Start/End: Original strand, 30382420 - 30382647
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatta 203  Q
    ||||||||| | ||||||||||||| | ||||||||||||| ||  ||||||||||||||||||||||||||| |||||| | |||||||||||  ||||    
T  30382420 aaatctcaaagttatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaaaaagtctcacaaaattgatta 30382519  T
Q  204 ttcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggact 303  Q
     |||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||    
T  30382520 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccactggattttattgaact 30382619  T
Q  304 cattaaaaaatcttgaaaatcttaattg 331  Q
     ||||||||||| |||||||| ||||||    
T  30382620 aattaaaaaatcatgaaaatcctaattg 30382647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 153 - 331
Target Start/End: Complemental strand, 9209325 - 9209147
Alignment:
Q  153 gagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaa 252  Q
    |||||||||||||||||||||||| |||||| | |||||||||||  ||||  |||||||| | |||||||||| ||||||||||||||||| |||||||    
T  9209325 gagattgttagtaggtacattttacactaaaaagtctcacaaaataaattacccacaacaaactattaaaatccttagagttttgaataccaatagacaa 9209226  T
Q  253 tttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||| | |||||| |||||||||||||||| ||||| |||| ||||||||||||||| |||||||||||||||    
T  9209225 tttttaagttgtccaaaatttcaattgaataccactggattttattgaactcattaaaaaatcctgaaaatcttaattg 9209147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 131 - 331
Target Start/End: Complemental strand, 35142353 - 35142153
Alignment:
Q  131 gaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtag 230  Q
    |||||||||  ||||||  ||||||| |||||||||||| |||||| |||||| | ||||| ||||||||||| ||||||||||| | |||||||||||     
T  35142353 gaaaagtcttgaggctagttgtgagagtgttagtaggtagattttacactaaaaagtctcataaaatccattactcacaacaatctaataaaatccgtaa 35142254  T
Q  231 agttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaatcttaatt 330  Q
      |||||||||||| ||||||||||||||||| | |||||||| |||||||||| ||  ||||| ||||||||||||||||||||||||||||| |||||    
T  35142253 tattttgaataccaatagacaatttttaagttgtacaaaatcttaattgaatacgaccggattttattggactcattaaaaaatcttgaaaatcctaatt 35142154  T
Q  331 g 331  Q
    |    
T  35142153 g 35142153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 247 - 331
Target Start/End: Original strand, 1605902 - 1605986
Alignment:
Q  247 agacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  1605902 agacaatttttaagttatgcaaaatctcaattgaatactactggatttcattagactcattaaaaaatcttgaaaatcttaattg 1605986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 41965327 - 41965404
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagt 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  41965327 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgcgagattgttagt 41965404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 40013363 - 40013444
Alignment:
Q  249 acaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaatcttaatt 330  Q
    |||||||||||||| |||||||||| ||||||||||||||  |||| |||| |||||||||||||||||||||||| |||||    
T  40013363 acaatttttaagttgtgcaaaatctaaattgaataccactgaattttattgaactcattaaaaaatcttgaaaatcctaatt 40013444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 40013242 - 40013324
Alignment:
Q  103 aaaatctcaagg-ctatgtgtggg-agatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaa 183  Q
    |||||||||| | ||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  40013242 aaaatctcaaagtctatgtgtggggagacagaaaagtctcaaggccaagtgtgagattgttagtaggtatattttatactaaa 40013324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 2113222 - 2113171
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  2113222 atatataacctgccattattacagtagagcagaaaagattttggaagaaacg 2113171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 29259933 - 29259984
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  29259933 atatataacctgccattgttacaatagaacagaaaagaatttggaagaaacg 29259984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 43605026 - 43605077
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  43605026 atatataacctgccattgttacagtagaacaaaaaagaatttggaagaaacg 43605077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 9457938 - 9457887
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    ||||||| |||| |||| |||| |||||||||||||||||||||||||||||    
T  9457938 atatatatcctgccattgttacggtagaacagaaaagaatttggaagaaacg 9457887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 41386525 - 41386576
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    ||||||||||||  ||| ||||| ||||||||||||||||||||||||||||    
T  41386525 atatataacctgcgattgttacaatagaacagaaaagaatttggaagaaacg 41386576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 41965238 - 41965289
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||| |||||    
T  41965238 atatataacctgccattgttacattagaacagaaaagaatttggaataaacg 41965289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 324
Target Start/End: Original strand, 24296472 - 24296618
Alignment:
Q  178 actaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 277  Q
    |||||| | ||| |||||||||||| | |  || ||||||||||||||  || | ||||||||| ||  |||| |||||||||||||| ||  | |  ||    
T  24296472 actaaaaagtcttacaaaatccattctaccaaagaatccattaaaatctatacatttttgaatatcaagagactatttttaagttatgaaatttttttat 24296571  T
Q  278 tgaataccactagatttcattggactcattaaaaaatcttgaaaatc 324  Q
    |||||||||  |||||| |||| |||| |||||||||| ||||||||    
T  24296572 tgaataccatcagattttattgaactctttaaaaaatcatgaaaatc 24296618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 42275401 - 42275351
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaac 66  Q
    |||||||||||  |||| ||||||||||||| |||||||||||||||||||    
T  42275401 atatataacctaccattgttacagtagaacaaaaaagaatttggaagaaac 42275351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 4655458 - 4655421
Alignment:
Q  29 cattattacagtagaacagaaaagaatttggaagaaac 66  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4655458 cattgttacagtagaacagaaaagaatttggaagaaac 4655421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 23185906 - 23185838
Alignment:
Q  233 ttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattgga 301  Q
    |||| |||||||| |||||||||||||||| || ||||| |  |||||||||||| |||||| ||||||    
T  23185906 tttttaataccaggagacaatttttaagttgtgaaaaattttgattgaataccaccagattttattgga 23185838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 7148466 - 7148415
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||| ||  |||| |||||||| |||||||||||||||||||||||||    
T  7148466 atatataatctaccattgttacagtaaaacagaaaagaatttggaagaaacg 7148415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 43489311 - 43489260
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||| ||| |||| ||||||||||||| ||||||||||||| ||||||    
T  43489311 atatataatctgccattgttacagtagaacaaaaaagaatttggatgaaacg 43489260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 10796029 - 10796067
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaa 54  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  10796029 atatataacctgccattgttacagtagaacagaaaagaa 10796067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 9457868 - 9457832
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtg 123  Q
    |||||||||||||||||||||||||||| || |||||    
T  9457868 tttggaagagtattacaaaatctcaaggttaggtgtg 9457832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 87 - 331
Target Start/End: Complemental strand, 29941300 - 29941056
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  29941300 tttggaagagtattacaaaatctcaaggctatatgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaa 29941201  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29941200 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 29941101  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||||||| ||||||||||||||||||||||||| ||||||    
T  29941100 ctggatttcattagactcattaaaaaatcttgaaaatcctaattg 29941056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 89 - 331
Target Start/End: Original strand, 6289232 - 6289474
Alignment:
Q  89 tggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatc 188  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  6289232 tggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatc 6289331  T
Q  189 tcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccact 288  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  6289332 tcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatactagcagacaatttttaagttatgcaaaatctcaattgaataccact 6289431  T
Q  289 agatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
     |||||||||||| |||||||||||||||||||||| ||||||    
T  6289432 ggatttcattggattcattaaaaaatcttgaaaatcctaattg 6289474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 87 - 331
Target Start/End: Complemental strand, 45547286 - 45547042
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| |||||||||    
T  45547286 tttggaagtgtattacaaaatctcaaggctatgtgtgggagatataaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaa 45547187  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45547186 tctcacaaaatccattacttacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgctaaatctcaattgaatacca 45547087  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    ||  |||||||||||||||||||||||||||||||||| ||||||    
T  45547086 ctgaatttcattggactcattaaaaaatcttgaaaatcctaattg 45547042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 104 - 330
Target Start/End: Complemental strand, 11535173 - 11534947
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatta 203  Q
    ||||||||| ||||||||||||||| | ||||||||||||| || |||||||||||||||||||||||||||| |||||| | |||||||||||||||||    
T  11535173 aaatctcaaagctatgtgtgggagacaaaaaagtctcaaggttatgtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 11535074  T
Q  204 ttcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggact 303  Q
     |||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||    
T  11535073 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaattccactggattttattggact 11534974  T
Q  304 cattaaaaaatcttgaaaatcttaatt 330  Q
    |||||||||||| |||||||| |||||    
T  11534973 cattaaaaaatcctgaaaatcctaatt 11534947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 104 - 323
Target Start/End: Original strand, 24193232 - 24193451
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatta 203  Q
    |||| ||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||    
T  24193232 aaatttcaagactatgtgtgggagacaaaaaagtctcaaggttaagtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 24193331  T
Q  204 ttcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggact 303  Q
     |||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||  |||| ||||||||    
T  24193332 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttattggact 24193431  T
Q  304 cattaaaaaatcttgaaaat 323  Q
    |||||||||||| |||||||    
T  24193432 cattaaaaaatcctgaaaat 24193451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 103 - 331
Target Start/End: Original strand, 20157502 - 20157730
Alignment:
Q  103 aaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatt 202  Q
    ||||||||||| |||||||||||||| | ||||||||||| |||| |||||||||||||||||| | ||||||| |||||| | ||||||||||||||||    
T  20157502 aaaatctcaagactatgtgtgggagacaaaaaagtctcaaagctaggtgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 20157601  T
Q  203 attcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggac 302  Q
    | ||| ||||||| |||||||||| |||| |||||||||||| |||||||| |||||||| |||||||||| ||||||||||||||  |||| |||||||    
T  20157602 actcataacaatctattaaaatccttagaattttgaataccaatagacaatatttaagttgtgcaaaatctgaattgaataccactgaattttattggac 20157701  T
Q  303 tcattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||||||||||||| ||||||    
T  20157702 tcattaaaaaatcttgaaaatcctaattg 20157730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 103 - 331
Target Start/End: Original strand, 34028677 - 34028906
Alignment:
Q  103 aaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatt 202  Q
    ||||||||||| |||||||||| ||| | |||||||||||||||| |||||||||||||||||| | ||||||| |||||| | ||||||||||||||||    
T  34028677 aaaatctcaagactatgtgtggcagacaaaaaagtctcaaggctaggtgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 34028776  T
Q  203 attcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttca-ttgga 301  Q
    | ||  |||||||||||||||||| || | |||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| ||||| | |||||    
T  34028777 actcgtaacaatccattaaaatccttataattttgaataccaatagacaatttttaagttgtgcaaaatctgaattgaataccactggattttatttgga 34028876  T
Q  302 ctcattaaaaaatcttgaaaatcttaattg 331  Q
    ||||||||||||||||||||||| ||||||    
T  34028877 ctcattaaaaaatcttgaaaatcctaattg 34028906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 109 - 331
Target Start/End: Original strand, 11998169 - 11998390
Alignment:
Q  109 tcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcac 208  Q
    |||||||||||||||||||| | |||| ||||||||||  ||||||||||||| |||| ||||||||| |||||| | ||||||||||||||||| ||||    
T  11998169 tcaaggctatgtgtgggagacaaaaaaatctcaaggctg-gtgtgagattgttggtagatacattttacactaaaaagtctcacaaaatccattactcac 11998267  T
Q  209 aacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcatta 308  Q
    ||||| |||||||||||| |||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||| || ||||| |||||||||||||    
T  11998268 aacaaaccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacctctggattttattggactcatta 11998367  T
Q  309 aaaaatcttgaaaatcttaattg 331  Q
    ||||||  |||||||| ||||||    
T  11998368 aaaaattctgaaaatcctaattg 11998390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 123 - 331
Target Start/End: Complemental strand, 24193875 - 24193660
Alignment:
Q  123 gggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaaa 222  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||| ||||||||||||    
T  24193875 gggagacagaaaagtcttgaggctaagtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcacagcaatccattaaa 24193776  T
Q  223 a-------tccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatc 315  Q
    |       | |||||| |||||||||||| || ||| |||||||||| ||||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  24193775 aattaaaattcgtagaattttgaataccaataaacagtttttaagttgtgcaaaatctcaattgaataccaccgaattttattggactcattaaaaaatc 24193676  T
Q  316 ttgaaaatcttaattg 331  Q
    ||||||||| ||||||    
T  24193675 ttgaaaatcctaattg 24193660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 162 - 331
Target Start/End: Complemental strand, 45485631 - 45485472
Alignment:
Q  162 agtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagt 261  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||  |||||||          |    
T  45485631 agtaggtacattttacgctaaacaatctcacaaaatccattactcacaacaatccattaaaatccatagaattttgaatattagtagac----------t 45485542  T
Q  262 tatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||||||||||||||||||  |||| |||||| ||||| |||||||||||||||| ||||||    
T  45485541 tatgcaaaatctcaattgaataccactgaattttattggattcattgaaaaatcttgaaaatcctaattg 45485472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 331
Target Start/End: Original strand, 38822753 - 38822907
Alignment:
Q  178 actaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 277  Q
    |||||| |||||||||||||||||||| |  |  |||||||| |||||  || | |||| |||||||  |||||||||||||||| || |||||||  ||    
T  38822753 actaaaaaatctcacaaaatccattataccaagtaatccattgaaatctatacattttttaataccaagagacaatttttaagttgtgaaaaatcttgat 38822852  T
Q  278 tgaataccactagatttcattggactcatt-aaaaaatcttgaaaatcttaattg 331  Q
     |||||||||  |||||  ||||| || || ||||||||||||||||| ||||||    
T  38822853 cgaataccaccggattttgttggattctttaaaaaaatcttgaaaatcctaattg 38822907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 6289165 - 6289216
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||| |||| |||||||||||||||||||||||||||| |||||    
T  6289165 atatataacctgccattgttacagtagaacagaaaagaatttggaataaacg 6289216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 7487813 - 7487864
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  7487813 atatataatctgtcattgttacagtagaacagaaaagaattttgaagaaacg 7487864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 29941377 - 29941326
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  29941377 atatataacatgccattgttacagtagaacagaaaagaatttggaagaaacg 29941326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 21736289 - 21736339
Alignment:
Q  17 tatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||| || |||| ||||||||||||||||||||||||| ||||||||    
T  21736289 tatataacatgccattgttacagtagaacagaaaagaatttgaaagaaacg 21736339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 18176289 - 18176397
Alignment:
Q  178 actaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 277  Q
    |||||| | |||||||||||||| | | ||  | ||||||||||||||   ||| |||||||||||| |||||| ||| |||| | |  |||||||||||    
T  18176289 actaaaaagtctcacaaaatccactctacaatagaatccattaaaatctcaagaattttgaataccaatagacattttataagatttataaaatctcaat 18176388  T
Q  278 tgaatacca 286  Q
    |||||||||    
T  18176389 tgaatacca 18176397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 286
Target Start/End: Original strand, 15284357 - 15284456
Alignment:
Q  188 ctcacaaaatccattattcacaacaatccattaaaatccgtagagttttg-aataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||| | || || ||||||||||||||  || | ||||| ||||||| |||||||||  ||||| |||  |||||| ||||||||||||    
T  15284357 ctcacaaaatccattgtacaaaagaatccattaaaatctataaacttttgtaataccaatagacaattcataagtcatgagaaatcttaattgaatacca 15284456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 35172337 - 35172376
Alignment:
Q  28 tcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  35172337 tcattgttacagtagaacataaaagaatttggaagaaacg 35172376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 43022694 - 43022654
Alignment:
Q  185 aatctcacaaaatccattattcacaacaatccattaaaatc 225  Q
    ||||||||||||| ||||||||| || ||||||||||||||    
T  43022694 aatctcacaaaattcattattcaaaagaatccattaaaatc 43022654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 81511 - 81755
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| ||||||||| |||||||||    
T  81511 tttggaagagtattacaaaatctcaaggctatgtgtgagagatagaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaaacaa 81610  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  81611 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccaggagacaatttttaagttatgcaaaatctcaattgaatacca 81710  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||||||||||||||||||||||||||||||||| ||||||    
T  81711 ctggatttcattggactcattaaaaaatcttgaaaatcctaattg 81755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 81440 - 81490
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaac 66  Q
    |||||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  81440 atatataacctgccattgttacagtagaacagaaaagaatttagaagaaac 81490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 87 - 331
Target Start/End: Complemental strand, 40410945 - 40410701
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  40410945 tttggaaaagtattacaaaatttcaaggctatgtgtgggagatagaaaagtctcaagtctaggtgtgagattgttagtaggtacattttacactaaacaa 40410846  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40410845 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatacgagtagacaatttttaagttatgcaaaatctcaattgaatacca 40410746  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||    
T  40410745 ctagatttcattggactcattaaaaaatcatgaaaatcctaattg 40410701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 104 - 330
Target Start/End: Original strand, 6828537 - 6828764
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaa-gtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatt 202  Q
    ||||||||| ||||||||||||||| | |||| ||||||||| ||  ||||||||||||||||||||||||||| |||||| | ||||||||||||||||    
T  6828537 aaatctcaaagctatgtgtgggagacaaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatt 6828636  T
Q  203 attcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggac 302  Q
    | ||| |||||||||||||||||| || | ||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||    
T  6828637 actcataacaatccattaaaatccttacaattttgaatatcaatagacaatttttaagttgtgcaaaatctcaattgaataccactggattttattggac 6828736  T
Q  303 tcattaaaaaatcttgaaaatcttaatt 330  Q
    ||||||||||||| |||||||| |||||    
T  6828737 tcattaaaaaatcctgaaaatcctaatt 6828764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 123 - 331
Target Start/End: Complemental strand, 17518748 - 17518539
Alignment:
Q  123 gggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaaa 222  Q
    |||||| ||||||||||  |||||  |||||||||||||||||||||||||||| |||||| | ||||||||||||||||| || ||||| |||||||||    
T  17518748 gggagacagaaaagtcttgaggctgggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcgcaacattccattaaa 17518649  T
Q  223 atccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca-ctagatttcattggactcattaaaaaatcttgaaa 321  Q
    ||||||||| |||||||| ||| || |||||||||||||| |||||||||| |||||||||||| |  ||||| ||||||||| ||||||||||||||||    
T  17518648 atccgtagaattttgaatcccaataaacaatttttaagttgtgcaaaatcttaattgaataccaccgggattttattggactctttaaaaaatcttgaaa 17518549  T
Q  322 atcttaattg 331  Q
    ||| ||||||    
T  17518548 atcctaattg 17518539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 123 - 331
Target Start/End: Complemental strand, 10571430 - 10571222
Alignment:
Q  123 gggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaaa 222  Q
    |||||| |||||||||| |||| || ||||||||||||||||| ||||||||||||||||| | | ||||||||||||||  | ||||||||| ||||||    
T  10571430 gggagacagaaaagtcttaaggttaggtgtgagattgttagtatgtacattttatactaaaaagtttcacaaaatccattcctgacaacaatctattaaa 10571331  T
Q  223 atccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaa 322  Q
     | | |||| |||||||||||| ||||||||||||||||| | |||||||| |||||||||||||  ||||| ||||||||| ||||||||| |||||||    
T  10571330 tttcatagaattttgaataccaatagacaatttttaagttgtacaaaatcttaattgaataccaccggattttattggactctttaaaaaattttgaaaa 10571231  T
Q  323 tcttaattg 331  Q
    || ||||||    
T  10571230 tcctaattg 10571222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 2276025 - 2276133
Alignment:
Q  178 actaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 277  Q
    |||||| |||||||||||||||||||| || || ||||||||||||||  |||| ||||||||| || |||||||||  ||||| |||  |||| | |||    
T  2276025 actaaaaaatctcacaaaatccattatacaaaagaatccattaaaatctatagacttttgaatatcaatagacaattcataagtcatgagaaattttaat 2276124  T
Q  278 tgaatacca 286  Q
    |||||||||    
T  2276125 tgaatacca 2276133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 6902525 - 6902644
Alignment:
Q  212 aatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaa 311  Q
    |||||||| |||||  || | ||||||||||||  |||||||||||||||| |  |||||||  |||||||||||| ||||||  |||||||| ||||||    
T  6902525 aatccattgaaatcaatacatttttgaataccaagagacaatttttaagttgtaaaaaatcttgattgaataccaccagattttgttggactctttaaaa 6902624  T
Q  312 aatcttgaaaatcttaattg 331  Q
    |||| | |||||| ||||||    
T  6902625 aatcattaaaatcctaattg 6902644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 40411021 - 40410970
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  40411021 atatataacctgtcattgttacagtagaatagaaaagaatttggaagaaacg 40410970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 3604127 - 3604178
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||| ||||  |||||||||||| ||||||||||||||||||||    
T  3604127 atatataacctgccattgctacagtagaacaaaaaagaatttggaagaaacg 3604178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 13950454 - 13950505
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||| ||| |||| ||||||||||||||||||||||||| ||||||||    
T  13950454 atatataatctgccattgttacagtagaacagaaaagaatttgaaagaaacg 13950505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 42218175 - 42218419
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  42218175 tttggaagaatattacaaaatctcaaggctatgtgtaggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaa 42218274  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42218275 tctcacaaaattcattactcacaacaatccattaaaatccgtagagttttgaatatcagtagacaatttttaagttatgcaaaatctcaattgaatacca 42218374  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||||||||||||||||||||||||||||||||| ||||||    
T  42218375 ctggatttcattggactcattaaaaaatcttgaaaatcctaattg 42218419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 8583734 - 8583978
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  8583734 tttggaagagtattacaaaatctcaaggctatgtgttggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaa 8583833  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8583834 tctcacaaaattcattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatcttaattgaatacca 8583933  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    ||  |||||||||||||| ||||||||||||||||||| ||||||    
T  8583934 ctgaatttcattggactcgttaaaaaatcttgaaaatcctaattg 8583978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 87 - 331
Target Start/End: Complemental strand, 44930230 - 44929988
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  44930230 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaaatctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaa 44930131  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44930130 tctcacaaaatcctttactcacaacaatccattaaaatccgtagagttttgaatacccgtagacaatttttaagttatgcaaaatctcaattgaatacca 44930031  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    ||  |||||||||  ||||||||||||||||||||||| ||||||    
T  44930030 ctgaatttcattg--ctcattaaaaaatcttgaaaatcctaattg 44929988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 3435692 - 3435930
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    |||||||||||||||||||||||||||||||||      |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  3435692 tttggaagagtattacaaaatctcaaggctatg------agatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaa 3435785  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  3435786 tctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagcacacaatttttaagttatgcaaaatctcaattgaatacca 3435885  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    ||  |||||||||||||||||||||||||||||||||| ||||||    
T  3435886 ctgaatttcattggactcattaaaaaatcttgaaaatcctaattg 3435930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 122 - 331
Target Start/End: Complemental strand, 8880764 - 8880555
Alignment:
Q  122 tgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaa 221  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  8880764 tgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaattcattactcacaacaatccattaa 8880665  T
Q  222 aatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaa 321  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8880664 aatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatcttgaaa 8880565  T
Q  322 atcttaattg 331  Q
    ||| ||||||    
T  8880564 atcctaattg 8880555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 104 - 331
Target Start/End: Complemental strand, 52109744 - 52109517
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatta 203  Q
    ||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  52109744 aaatctcaaggttatgtgtgggagacagaaaagtctcaaggctaggtgtgggattgttagtaggtacattttacattaaacaatctcacaaaatccatta 52109645  T
Q  204 ttcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggact 303  Q
     ||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  52109644 ctcacaacaatccattaaaatccgtagagttttgaatatcggtatacaatttttaagttatgcaaaatctcaattgaataccattggatttcattggact 52109545  T
Q  304 cattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||| |||||||| ||||||    
T  52109544 cattaaaaaatcatgaaaatcctaattg 52109517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 103 - 331
Target Start/End: Complemental strand, 25936127 - 25935898
Alignment:
Q  103 aaaatctcaaggctatgtgtgggagata--gaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatcca 200  Q
    |||||||||||  ||||||||||||| |  ||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  25936127 aaaatctcaagattatgtgtgggagacacagaaaagtctcaaggcta-gtgtgagattgttaataggttcattttacactaaacaatctcacaaaatcca 25936029  T
Q  201 ttattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattgg 300  Q
    ||| |||||||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25936028 ttactcacaacaatccattaaaattcgatgagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaatactactagatttcattgg 25935929  T
Q  301 actcattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||||| ||||||||| ||||||    
T  25935928 actcattaaaaaattttgaaaatcctaattg 25935898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 107 - 331
Target Start/End: Complemental strand, 45333001 - 45332777
Alignment:
Q  107 tctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattc 206  Q
    |||||||||||||||||||||| | |||||||||||||||| ||||||||||||| |||| ||||||||| |||||| | | ||| ||||||||||| ||    
T  45333001 tctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtttcataaaatccattactc 45332902  T
Q  207 acaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcat 306  Q
    |||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||| || ||||| |||||||||||    
T  45332901 acaacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacctctggattttattggactcat 45332802  T
Q  307 taaaaaatcttgaaaatcttaattg 331  Q
    ||||||||| |||||||| ||||||    
T  45332801 taaaaaatcctgaaaatcctaattg 45332777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 109 - 331
Target Start/End: Complemental strand, 47685477 - 47685255
Alignment:
Q  109 tcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcac 208  Q
    |||||||||||||||||||| | ||||||||||||  || |||||||||||||||||||||||||||| |||||| | |||| ||||||| |||| ||||    
T  47685477 tcaaggctatgtgtgggagacaaaaaagtctcaagtttaggtgtgagattgttagtaggtacattttacactaaaaagtctcgcaaaatctattactcac 47685378  T
Q  209 aacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcatta 308  Q
    |||||||||||||||||| || | |||||||||||| |||||||||||||||||  ||||||||||||||||||||||||  |||| |||||||||||||    
T  47685377 aacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgagcaaaatctcaattgaataccactgaattttattggactcatta 47685278  T
Q  309 aaaaatcttgaaaatcttaattg 331  Q
    |||||||||||||||| ||||||    
T  47685277 aaaaatcttgaaaatcctaattg 47685255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 103 - 315
Target Start/End: Complemental strand, 26336407 - 26336195
Alignment:
Q  103 aaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatt 202  Q
    |||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||| |||| ||||||||| |||||| | ||||||||||||||||    
T  26336407 aaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtctcacaaaatccatt 26336308  T
Q  203 attcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggac 302  Q
    | |||||| ||||||||||||||| |||| |||||||||||| || |||||||||||||| || ||||||||||||||||||| || ||||| |||||||    
T  26336307 actcacaataatccattaaaatccttagaattttgaataccaataaacaatttttaagttgtgtaaaatctcaattgaatacctctggattttattggac 26336208  T
Q  303 tcattaaaaaatc 315  Q
    |||||||||||||    
T  26336207 tcattaaaaaatc 26336195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 107 - 331
Target Start/End: Complemental strand, 45340691 - 45340467
Alignment:
Q  107 tctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattc 206  Q
    |||||||||||||||||||||| | |||||||||||||||| ||||||||||||| |||| ||||||||| |||||| | | ||| ||||||||||| ||    
T  45340691 tctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtttcataaaatccattactc 45340592  T
Q  207 acaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcat 306  Q
    |||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||| || ||||| |||||||||||    
T  45340591 acaacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacctctggattttattggactcat 45340492  T
Q  307 taaaaaatcttgaaaatcttaattg 331  Q
    ||||||||  |||||||| ||||||    
T  45340491 taaaaaattctgaaaatcctaattg 45340467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 107 - 331
Target Start/End: Complemental strand, 42721055 - 42720830
Alignment:
Q  107 tctcaaggctatgtgtgggagatagaaaa-gtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattatt 205  Q
    |||||||||||||||||||||| | |||| |||||||||||| ||||||||||||| |||| ||||||||| |||||| | ||||||||||||||||| |    
T  42721055 tctcaaggctatgtgtgggagacaaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtctcacaaaatccattact 42720956  T
Q  206 cacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactca 305  Q
    |||||||| |||||||||||| |||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||| || ||||| ||||||||||    
T  42720955 cacaacaacccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacctctggattttattggactca 42720856  T
Q  306 ttaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||  |||||||| ||||||    
T  42720855 ttaaaaaattctgaaaatcctaattg 42720830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 123 - 331
Target Start/End: Original strand, 33449944 - 33450152
Alignment:
Q  123 gggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaaa 222  Q
    |||||| |||||||| |  |||||| |||||||||||||||||| ||||||||| ||||||   ||||||||||||||||| |||||| |||||||||||    
T  33449944 gggagacagaaaagtgttgaggctatgtgtgagattgttagtagatacattttacactaaaatgtctcacaaaatccattactcacaataatccattaaa 33450043  T
Q  223 atccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaa 322  Q
    ||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||    
T  33450044 atccgtagaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccaccgaattttattggactcattaaaaaatcttgaaaa 33450143  T
Q  323 tcttaattg 331  Q
    || ||||||    
T  33450144 tcctaattg 33450152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 104 - 331
Target Start/End: Complemental strand, 54510050 - 54509825
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaa-gtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatt 202  Q
    ||||||||| ||||||||||||||| | |||| | ||||||| || |||||||||||||||||||||||||||| |||||| | ||||||||||||||||    
T  54510050 aaatctcaaagctatgtgtgggagacaaaaaaagcctcaaggttaggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatt 54509951  T
Q  203 attcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggac 302  Q
       || |||||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||    
T  54509950 ---cataacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccactggattttattggac 54509854  T
Q  303 tcattaaaaaatcttgaaaatcttaattg 331  Q
    ||||||||||||  |||||||| ||||||    
T  54509853 tcattaaaaaattatgaaaatcctaattg 54509825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 104 - 331
Target Start/End: Complemental strand, 40144098 - 40143887
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatta 203  Q
    ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| |||||| | ||||||||             
T  40144098 aaatctcaaggctatgtgtgggagacaaaaaagtctcaaggttaagtgtgagattgttagtaggtacattttacactaaaaagtctcacaa--------- 40144008  T
Q  204 ttcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggact 303  Q
           |||||||||||||| | || | |||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||  |||| ||||||||    
T  40144007 -------caatccattaaaattcttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaatacctctgaattttattggact 40143915  T
Q  304 cattaaaaaatcttgaaaatcttaattg 331  Q
     ||||||||||| |||||||| ||||||    
T  40143914 tattaaaaaatcatgaaaatcctaattg 40143887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 87 - 265
Target Start/End: Complemental strand, 7820402 - 7820239
Alignment:
Q  87 tttggaagagtattacaaaatctcaagg-ctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaaca 185  Q
    |||||||||||| ||||||||| ||||| |||||||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||| ||||||||    
T  7820402 tttggaagagtaatacaaaatcccaagggctatgtgtgggagacagaaaagtctccaggctaggtgtgagattgttagtaggtgcattttacactaaaca 7820303  T
Q  186 atctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatg 265  Q
    |||||| |||                ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7820302 atctcataaa----------------aattcattaaaatccgtagagttttgaatactagtagacaatttttaagttatg 7820239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 7820476 - 7820425
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  7820476 atatataacctgtcattgttatagtagaacataaaagaatttggaagaaacg 7820425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 42315299 - 42315248
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    ||||||||||||||||| ||||||||||| ||||||||||||| ||||||||    
T  42315299 atatataacctgtcattgttacagtagaatagaaaagaatttgaaagaaacg 42315248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 44930306 - 44930255
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  44930306 atatataacctgccattgttatagtagaacagaaaagaatttggaagaaacg 44930255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 56397835 - 56397784
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||| |||| || |||||||||||||||||||||||||||||||    
T  56397835 atatataacctgccattgttgcagtagaacagaaaagaatttggaagaaacg 56397784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 3435631 - 3435680
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaa 65  Q
    |||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  3435631 atatataacctgccattgttacagtagaacagaagagaatttggaagaaa 3435680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 331
Target Start/End: Complemental strand, 5117156 - 5117072
Alignment:
Q  247 agacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    ||||||||||||||||  | |||||||  || |||||||||  |||||||||| |||| ||||||| || |||||||||||||||    
T  5117156 agacaatttttaagttgcgaaaaatcttgatggaataccaccggatttcattgaactctttaaaaagtcctgaaaatcttaattg 5117072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 42218102 - 42218153
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||| ||| |||| ||||||||||| ||||||||||||||||||||||    
T  42218102 atatataatctgccattgttacagtagaatagaaaagaatttggaagaaacg 42218153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 38231036 - 38230928
Alignment:
Q  178 actaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 277  Q
    |||||| | ||||||||||||||||     ||| ||||||| ||||||  |||| |||||||||||| | |||||||  ||||| |||  ||||||||||    
T  38231036 actaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaattcataagtcatgagaaatctcaat 38230937  T
Q  278 tgaatacca 286  Q
    |||||||||    
T  38230936 tgaatacca 38230928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 8583666 - 8583717
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||| ||||| |||| ||| ||||||||||||||||||||||| ||||||    
T  8583666 atatatgacctgccattgttatagtagaacagaaaagaatttggatgaaacg 8583717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 7820240 - 7820207
Alignment:
Q  298 tggactcattaaaaaatcttgaaaatcttaattg 331  Q
    ||||||||||||||||||||||||||| ||||||    
T  7820240 tggactcattaaaaaatcttgaaaatcctaattg 7820207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 26882555 - 26882799
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||  ||||||||| |||||||||    
T  26882555 tttggaagagtattacaaaatctcaaggctatgtgtgggtgatagaaaagtctcaaggctaggtgtgagattgttagtatatacattttacactaaacaa 26882654  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26882655 tctcacaaaatccattactcacaacaatccattaaaatctgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 26882754  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||||||||||||||||||||||||||||||||| ||||||    
T  26882755 ctggatttcattggactcattaaaaaatcttgaaaatcctaattg 26882799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 87 - 331
Target Start/End: Complemental strand, 45318815 - 45318571
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||||||||||||||||||||| |||||||||    
T  45318815 tttggaagagtattacaaaatctcaaggctatgtgtgggtgataaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaa 45318716  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45318715 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 45318616  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || |||||||||||| |||||| ||||||||||||||| ||||||    
T  45318615 ctggatttcattggattcattagaaaatcttgaaaatcctaattg 45318571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 87 - 331
Target Start/End: Complemental strand, 52705748 - 52705504
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||||||||| || ||||||    
T  52705748 tttggaagagtattacaatatctcaaggctatgtgtgggagatagaaaagtcttaaggctaggcgtgagattgttagtaagtacattttacaccaaacaa 52705649  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52705648 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 52705549  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||||||||||||||||||||||||||||||||| ||||||    
T  52705548 ctggatttcattggactcattaaaaaatcttgaaaatcctaattg 52705504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 103 - 331
Target Start/End: Original strand, 1928149 - 1928377
Alignment:
Q  103 aaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatt 202  Q
    ||||||||||| |||||||||||||| | ||||||| |||||||| |||||||||||||||||| | ||||||| |||||| | ||||||||||||||||    
T  1928149 aaaatctcaagactatgtgtgggagacaaaaaagtcacaaggctaggtgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 1928248  T
Q  203 attcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggac 302  Q
    | ||| |||||||||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| ||||| |||||||    
T  1928249 actcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgcaaaatctgaattgaataccactggattttattggac 1928348  T
Q  303 tcattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||||||||||||| ||||||    
T  1928349 tcattaaaaaatcttgaaaatcctaattg 1928377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 104 - 331
Target Start/End: Complemental strand, 36402585 - 36402358
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatta 203  Q
    ||||||||| | ||||||||||||| | ||||||||||||| ||  ||||||||||||||||||||||||||| |||||| | |||||||||||||||||    
T  36402585 aaatctcaaagttatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 36402486  T
Q  204 ttcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggact 303  Q
     |||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  36402485 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccactggattttattggact 36402386  T
Q  304 cattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||| |||||||| ||||||    
T  36402385 cattaaaaaatcctgaaaatcctaattg 36402358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 107 - 331
Target Start/End: Complemental strand, 29209090 - 29208866
Alignment:
Q  107 tctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattc 206  Q
    |||||||||||||||||||||| | |||||||||||||||| ||||||||||||| |||| || || ||| |||||| | ||||||||||||||||| ||    
T  29209090 tctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatatatgttacactaaaaagtctcacaaaatccattactc 29208991  T
Q  207 acaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcat 306  Q
    |||||||||||||||||||| ||||  ||||||||||| ||||||||||||||||| || ||||||||||||||||||| || ||||| |||||||||||    
T  29208990 acaacaatccattaaaatccttagaactttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacctctggattttattggactcat 29208891  T
Q  307 taaaaaatcttgaaaatcttaattg 331  Q
    ||||||||| |||||||| ||||||    
T  29208890 taaaaaatcctgaaaatcctaattg 29208866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 104 - 331
Target Start/End: Original strand, 33243060 - 33243283
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatta 203  Q
    ||||||||||||||||||||||||| | |||||||||     || ||||||||||||||||||||||| |||| | |||| | | |||||||||||||||    
T  33243060 aaatctcaaggctatgtgtgggagacaaaaaagtctct----taggtgtgagattgttagtaggtacaatttacattaaaaagtttcacaaaatccatta 33243155  T
Q  204 ttcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggact 303  Q
     |||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||| |||| |||    
T  33243156 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtacaaaatctcaattgaataccactggattttattgtact 33243255  T
Q  304 cattaaaaaatcttgaaaatcttaattg 331  Q
    ||||||||||||||||||||| ||||||    
T  33243256 cattaaaaaatcttgaaaatcctaattg 33243283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 104 - 331
Target Start/End: Original strand, 33263233 - 33263456
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatta 203  Q
    ||||||||||||||||||||||||| | |||||||||     || ||||||||||||||||||||||| |||| | |||| | | |||||||||||||||    
T  33263233 aaatctcaaggctatgtgtgggagacaaaaaagtctct----taggtgtgagattgttagtaggtacaatttacattaaaaagtttcacaaaatccatta 33263328  T
Q  204 ttcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggact 303  Q
     |||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||| |||| |||    
T  33263329 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtacaaaatctcaattgaataccactggattttattgtact 33263428  T
Q  304 cattaaaaaatcttgaaaatcttaattg 331  Q
    ||||||||||||||||||||| ||||||    
T  33263429 cattaaaaaatcttgaaaatcctaattg 33263456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 104 - 331
Target Start/End: Complemental strand, 10897138 - 10896911
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatta 203  Q
    ||||||||| |||||||||| |||| | |||||| |||||| || |||||||||||||||||||||||||||| | ||||   | |||||||||||||||    
T  10897138 aaatctcaaagctatgtgtgagagacaaaaaagtgtcaaggttaggtgtgagattgttagtaggtacattttacattaaaatgtttcacaaaatccatta 10897039  T
Q  204 ttcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggact 303  Q
     ||| ||||||||||||||||||    | |||||||||||| |||||||||||||||||  |||||||||||||||||||||||| ||||| ||| ||||    
T  10897038 ctcataacaatccattaaaatcctaccaattttgaataccaatagacaatttttaagttgggcaaaatctcaattgaataccactggattttattagact 10896939  T
Q  304 cattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||| |||||||| ||||||    
T  10896938 cattaaaaaatcctgaaaatcctaattg 10896911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 137 - 330
Target Start/End: Complemental strand, 45535089 - 45534918
Alignment:
Q  137 tctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagtttt 236  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||| ||||||||      
T  45535089 tctcaaggctacgtgtgagattgttagtaggtacattttacactcaacaatctcaaaaaatccattactcacaacaatccattaaaatcagtagagtt-- 45534992  T
Q  237 gaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaatcttaatt 330  Q
                        ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||||| |||||    
T  45534991 --------------------taagttatgcaaaatctcaattgaataccgctgaatttcattggactcattaaaaaatcttaaaaatcctaatt 45534918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 233 - 315
Target Start/End: Complemental strand, 9831499 - 9831417
Alignment:
Q  233 ttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatc 315  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  9831499 ttttgaataccaatagacaatttgtaagttgtgcaaaatctcaattgaataccactggattttattggactcattaaaaaatc 9831417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 9831859 - 9831782
Alignment:
Q  149 gtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaaaatcc 226  Q
    ||||||||||||||||| ||| |||||| |||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  9831859 gtgtgagattgttagtaagtatattttacactaaaaagtctcacaaaatccattactcacaacaatccattaaaatcc 9831782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 331
Target Start/End: Complemental strand, 9191402 - 9191242
Alignment:
Q  171 attttatactaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaa 270  Q
    |||||| | |||| |||||||||||||||||| | |  |  |||||||| |||||  || | ||||||||||||  |||||||||||||||| |   |||    
T  9191402 attttaaaataaaaaatctcacaaaatccattctaccaagtaatccattgaaatcaatacatttttgaataccaagagacaatttttaagttgtaataaa 9191303  T
Q  271 tctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    |||  |||||||||||| ||||||  |||||||| |||||||||| | |||||| ||||||    
T  9191302 tcttgattgaataccaccagattttgttggactctttaaaaaatcattaaaatcctaattg 9191242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 45318893 - 45318842
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||||||| |||| |||||||| |||||||||||||||||||||||||    
T  45318893 atatataacctgccattgttacagtataacagaaaagaatttggaagaaacg 45318842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 26882481 - 26882530
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaa 65  Q
    |||||||||||| |||| ||| ||||||||||||||||||||||||||||    
T  26882481 atatataacctgccattgttatagtagaacagaaaagaatttggaagaaa 26882530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 52705817 - 52705766
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    |||||||| ||| |||| |||||||| |||||||||||||||||||||||||    
T  52705817 atatataatctgccattgttacagtataacagaaaagaatttggaagaaacg 52705766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 19007400 - 19007508
Alignment:
Q  178 actaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 277  Q
    |||||| | ||||||||||||||||     ||| ||||||| ||||||  |||| |||| ||||||| |||||||||  ||||| |||  ||||||||||    
T  19007400 actaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagactttttaataccaatagacaattcataagtcatgagaaatctcaat 19007499  T
Q  278 tgaatacca 286  Q
    |||||||||    
T  19007500 tgaatacca 19007508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 48194854 - 48194746
Alignment:
Q  178 actaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 277  Q
    |||||| | ||||||||||||||||     ||| ||||||| ||||||  |||| |||||||||||| | |||||||  ||||| |||  ||||||||||    
T  48194854 actaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaattcataagtcatgagaaatctcaat 48194755  T
Q  278 tgaatacca 286  Q
    |||||||||    
T  48194754 tgaatacca 48194746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 48203612 - 48203504
Alignment:
Q  178 actaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 277  Q
    |||||| | ||||||||||||||||     ||| ||||||| ||||||  |||| |||||||||||  | |||||||  ||||| |||  ||||||||||    
T  48203612 actaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaatacctatggacaattcataagtcatgagaaatctcaat 48203513  T
Q  278 tgaatacca 286  Q
    |||||||||    
T  48203512 tgaatacca 48203504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 6476442 - 6476686
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||    
T  6476442 tttgaaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagttacattttacactaaacaa 6476541  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6476542 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaatacca 6476641  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
    || ||||| ||||||||||||||||||||||||||||| ||||||    
T  6476642 ctggattttattggactcattaaaaaatcttgaaaatcctaattg 6476686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 137 - 323
Target Start/End: Original strand, 29834064 - 29834250
Alignment:
Q  137 tctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagtttt 236  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  29834064 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 29834163  T
Q  237 gaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaat 323  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29834164 gaataccgatagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatcttgaaaat 29834250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 137 - 323
Target Start/End: Original strand, 29865498 - 29865684
Alignment:
Q  137 tctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagtttt 236  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  29865498 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 29865597  T
Q  237 gaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaat 323  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29865598 gaataccgatagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatcttgaaaat 29865684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 111 - 323
Target Start/End: Original strand, 3110038 - 3110250
Alignment:
Q  111 aaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaa 210  Q
    ||||||||||||||||||||||||||||| ||  ||| ||| |||||||| |||| |||||||||| |||||||||||||||||||||||||| ||||||    
T  3110038 aaggctatgtgtgggagatagaaaagtcttaatactaggtgcgagattgtcagtatgtacattttacactaaacaatctcacaaaatccattactcacaa 3110137  T
Q  211 caatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaa 310  Q
    ||||||||||||||||||||||||||||||| | | | |||||||| |||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  3110138 caatccattaaaatccgtagagttttgaataactgcacacaattttcaagttaggcaaaatctcaattgaatatcactggatttcattggactcattaaa 3110237  T
Q  311 aaatcttgaaaat 323  Q
    |||||||||||||    
T  3110238 aaatcttgaaaat 3110250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 103 - 331
Target Start/End: Complemental strand, 30878191 - 30877963
Alignment:
Q  103 aaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatt 202  Q
    ||||||||||| |||||||||||||| | ||||||||||||||||  ||||||||||||||||| | ||||||| |||||| | ||||||||||||||||    
T  30878191 aaaatctcaagactatgtgtgggagacaaaaaagtctcaaggctagatgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 30878092  T
Q  203 attcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggac 302  Q
    | ||| |||||||||||||||||| |||| |||||||||||| ||||||||||||||| | | |||||||| |||||||||||||||||||| |||||||    
T  30878091 actcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagctgtacaaaatctgaattgaataccactagattttattggac 30877992  T
Q  303 tcattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||||||||||||| ||||||    
T  30877991 tcattaaaaaatcttgaaaatcctaattg 30877963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 104 - 331
Target Start/End: Original strand, 10643758 - 10643987
Alignment:
Q  104 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccatta 203  Q
    |||||| |||||||||||||||||| | |||||||| |||  || |||||||||||||||||||||||||||| |||||| | |||||||||||||||||    
T  10643758 aaatcttaaggctatgtgtgggagacaaaaaagtcttaagattaggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 10643857  T
Q  204 ttcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatg--caaaatctcaattgaataccactagatttcattgga 301  Q
     |||||||||||||||||||||| || | |||||| ||||| ||||||||||||||||| ||  ||||||||||||||||||||||| ||||| ||||||    
T  10643858 ctcacaacaatccattaaaatccttacaattttgattaccaatagacaatttttaagttgtgatcaaaatctcaattgaataccactggattttattgga 10643957  T
Q  302 ctcattaaaaaatcttgaaaatcttaattg 331  Q
    |||||||||||||| |||||||| ||||||    
T  10643958 ctcattaaaaaatcctgaaaatcctaattg 10643987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 187 - 331
Target Start/End: Original strand, 7858203 - 7858347
Alignment:
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    |||||||||||| |||| |||||||||| |||||||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  7858203 tctcacaaaatctattactcacaacaatgcattaaaatccgtagaattttgaatatcaatagacaatttttaagttgtgcaaaatctcaattgaatacca 7858302  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatcttaattg 331  Q
     |  | || |||| |||||||||||||||||||||||| ||||||    
T  7858303 gtgcactttattgaactcattaaaaaatcttgaaaatcctaattg 7858347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 6476369 - 6476420
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  6476369 atatataacatggcattgttacagtagaacagaaaagaatttggaagaaacg 6476420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 29865407 - 29865458
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    ||||||| |||| |||| ||||||||||||||||||||||||||||||||||    
T  29865407 atatatatcctgccattgttacagtagaacagaaaagaatttggaagaaacg 29865458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 709178 - 709070
Alignment:
Q  178 actaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 277  Q
    |||||| | |||||||||||||||||    ||| ||||||| ||||||  |||| |||||||||||| |||||||||  ||||| |||  |||| |||||    
T  709178 actaaaaagtctcacaaaatccattacatccaagaatccatcaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaatttcaat 709079  T
Q  278 tgaatacca 286  Q
    |||||||||    
T  709078 tgaatacca 709070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 5957393 - 5957285
Alignment:
Q  178 actaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 277  Q
    |||||| | |||||||||||||||||| |  || |||  |||||||||  |||| |||||||||||| |||||||||  ||||| |||  |||||| |||    
T  5957393 actaaaaagtctcacaaaatccattatacgaaaaaatatattaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaatcttaat 5957294  T
Q  278 tgaatacca 286  Q
    |||||||||    
T  5957293 tgaatacca 5957285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 7100428 - 7100320
Alignment:
Q  178 actaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 277  Q
    |||||| | ||||||||||||||||     ||| ||||||| ||||||  |||| |||||||||||| | |||||||  ||||| |||  ||||||||||    
T  7100428 actaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaattcataagtcatgagaaatctcaat 7100329  T
Q  278 tgaatacca 286  Q
    |||||||||    
T  7100328 tgaatacca 7100320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 8794202 - 8794310
Alignment:
Q  178 actaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 277  Q
    |||||| | ||||||||||||||||     ||| ||||||| ||||||  |||| |||||||||||| | |||||||  ||||| |||  ||||||||||    
T  8794202 actaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaattcataagtcatgagaaatctcaat 8794301  T
Q  278 tgaatacca 286  Q
    |||||||||    
T  8794302 tgaatacca 8794310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 29834044 - 29834080
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtg 123  Q
    |||||||||||||||||||||||||||| || |||||    
T  29834044 tttggaagagtattacaaaatctcaaggttaggtgtg 29834080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 29865478 - 29865514
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtg 123  Q
    |||||||||||||||||||||||||||| || |||||    
T  29865478 tttggaagagtattacaaaatctcaaggttaggtgtg 29865514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 87 - 324
Target Start/End: Original strand, 34543 - 34780
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaa 186  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| ||||||||| |||||||||    
T  34543 tttggaagagtattacaaaatctcaaggctatgtgtgagagatagaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaaacaa 34642  T
Q  187 tctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 286  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  34643 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatatcagcagacaatttttaagttatgcaaaatctcaattgaatacca 34742  T
Q  287 ctagatttcattggactcattaaaaaatcttgaaaatc 324  Q
    ||  ||||||||||||||||||||||||||||||||||    
T  34743 ctgtatttcattggactcattaaaaaatcttgaaaatc 34780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 34472 - 34522
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaac 66  Q
    |||||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  34472 atatataacctgccattgttacagtagaacagaaaagaatttagaagaaac 34522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 137 - 323
Target Start/End: Original strand, 21192 - 21378
Alignment:
Q  137 tctcaaggctaagtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagtttt 236  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  21192 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 21291  T
Q  237 gaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattggactcattaaaaaatcttgaaaat 323  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21292 gaataccgatagacaatttttaagttatgcaaaatctcaattgaataccactggatttcattggactcattaaaaaatcttgaaaat 21378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 21102 - 21153
Alignment:
Q  16 atatataacctgtcattattacagtagaacagaaaagaatttggaagaaacg 67  Q
    ||||||| |||| |||| ||||||||||||||||||||||||||||||||||    
T  21102 atatatatcctgccattgttacagtagaacagaaaagaatttggaagaaacg 21153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 21172 - 21208
Alignment:
Q  87 tttggaagagtattacaaaatctcaaggctatgtgtg 123  Q
    |||||||||||||||||||||||||||| || |||||    
T  21172 tttggaagagtattacaaaatctcaaggttaggtgtg 21208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 103 - 323
Target Start/End: Original strand, 16303 - 16507
Alignment:
Q  103 aaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaa--gtgtgagattgttagtaggtacattttatactaaacaatctcacaaaatcca 200  Q
    ||||| ||||||||||||||| |||| | ||||||||||||| ||   ||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  16303 aaaatttcaaggctatgtgtgagagacataaaagtctcaaggttataggtgtgagattgttagtaggtacactttacactaaacaatctcacaaaatcca 16402  T
Q  201 ttattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactagatttcattgg 300  Q
    ||| |||||                  |||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  16403 ttactcaca------------------tagaattttgaatactaatagacaatttttaagttatgcaaaatctcaattgaataccactggattttattgg 16484  T
Q  301 actcattaaaaaatcttgaaaat 323  Q
    |||||||||||| ||||||||||    
T  16485 actcattaaaaattcttgaaaat 16507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 1705 - 1789
Alignment:
Q  178 actaaacaatctcacaaaatccattattcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagtt 262  Q
    |||||| | |||||||||||||||| | || || |||||||||||||| | ||| |||||||||||| |||||| ||| ||||||    
T  1705 actaaaaagtctcacaaaatccattctacaaaagaatccattaaaatctgcagatttttgaataccaatagacattttataagtt 1789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University