View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_low_21 (Length: 335)
Name: NF20174_low_21
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 24514090 - 24514416
Alignment:
| Q |
1 |
ctacaataataacccctaggggctcagccaagccagaaagagatgccaatttgaatgcttgccatttactatgacacatcacagaaataaaatnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24514090 |
ctacaataataacccctaggggctcagccaagccagaaagagatgccaatttgaatgcttgccatttactatgacacatcacagaaataaaataaaaaaa |
24514189 |
T |
|
| Q |
101 |
-gttacaactcgagtaatataattggcaaatcttctnnnnnnn-tatcgtattttcaagaatttgatggcatatatattagcattgtnnnnnnnnntt-a |
197 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| || | |
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| T |
24514190 |
agttacaactcgagtaatataattggcaaatcttataaaaaaaatatcgtattttcaagaatttgatagcatatatattagcattgtaaaaaaaaattta |
24514289 |
T |
|
| Q |
198 |
taccgatttctgataagaagccgtcaattttctatgtcacactatcaatttcgaaaatgaagtgatgtgccaaaataatggattctcgtgaatatcaatg |
297 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24514290 |
caccgatttctgataagaagtcgtcaattttctatgtcacactatcaatttcgaaaatgaagtgatgtgcaaaaataatggattctcgtgaatatcaatg |
24514389 |
T |
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| Q |
298 |
taaaaccgttttaagtacatacccttt |
324 |
Q |
| |
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|||||||||||||||||| |||||||| |
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| T |
24514390 |
taaaaccgttttaagtacgtacccttt |
24514416 |
T |
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