View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20174_low_22 (Length: 333)
Name: NF20174_low_22
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_22 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 3585016 - 3585321
Alignment:
| Q |
18 |
gatagagtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacaccccaaatagcaaggat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3585016 |
gatagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccttcaacagctcccattaagataacttggacagcccaaatagcaaggat |
3585115 |
T |
|
| Q |
118 |
gctttgttcatggactaggcttgggttacccaagtagtcaagtccaccctcaataaagatttgagattctgccttaaaccatatagcctcaccgaatttc |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | |||||||||||||||| |
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|
| T |
3585116 |
gctttgtgcatggactaggcttgggttacccaagtagtcaagtccaccctcactaaagatttgagatcctgccttaaaccacacagcctcaccgaatttc |
3585215 |
T |
|
| Q |
218 |
acacaattgtgagccaagagctctgggaagacacatcctaaggcacccaacatagcccatctactgtggatgacctcgagttcatggtttttggcaaatg |
317 |
Q |
| |
|
|||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| |
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|
| T |
3585216 |
acaccattgcgagccaagagttctgggaagacacatcctaaggcacccaacatagcccatctactatgaatgacctcgagttcacggtttttggcaaatg |
3585315 |
T |
|
| Q |
318 |
tctctg |
323 |
Q |
| |
|
|||||| |
|
|
| T |
3585316 |
tctctg |
3585321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 3576200 - 3575897
Alignment:
| Q |
20 |
tagagtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacaccccaaatagcaaggatgc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| | |
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|
| T |
3576200 |
tagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggacagcccatatagcaaggatac |
3576101 |
T |
|
| Q |
120 |
tttgttcatggactaggcttgggttacccaagtagtcaagtccaccctcaataaagatttgagattctgccttaaaccatatagcctcaccgaatttcac |
219 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||| | |||||| ||||||||||| |
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|
| T |
3576100 |
tttgtgcgtggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacagcctcgccgaatttcac |
3576001 |
T |
|
| Q |
220 |
acaattgtgagccaagagctctgggaagacacatcctaaggcacccaacatagcccatctactgtggatgacctcgagttcatggtttttggcaaatgtc |
319 |
Q |
| |
|
|| |||| ||| ||||||||| |||||||||||||| || || || |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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|
| T |
3576000 |
accattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtggatgacctcgagttcacggttcttggcaaatgtc |
3575901 |
T |
|
| Q |
320 |
tctg |
323 |
Q |
| |
|
|||| |
|
|
| T |
3575900 |
tctg |
3575897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 3564221 - 3563918
Alignment:
| Q |
20 |
tagagtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacaccccaaatagcaaggatgc |
119 |
Q |
| |
|
||||||||||| || |||||||| ||||||||| | |||||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
3564221 |
tagagtgggtcaaccacctcaccgagaggtccaccagcaatacggtaaccctcaacagcacccattaagataacttggacagcccatatagcaaggatgc |
3564122 |
T |
|
| Q |
120 |
tttgttcatggactaggcttgggttacccaagtagtcaagtccaccctcaataaagatttgagattctgccttaaaccatatagcctcaccgaatttcac |
219 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||| ||||||||| |||| ||||| ||| ||||||| ||||||| |||||| |||||||| || |
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|
| T |
3564121 |
tttgtgcatggactagacttgggttacccaagtagtcaagcccaccctcactaaaaatttgggatcctgccttgaaccatacagcctcgccgaatttgac |
3564022 |
T |
|
| Q |
220 |
acaattgtgagccaagagctctgggaagacacatcctaaggcacccaacatagcccatctactgtggatgacctcgagttcatggtttttggcaaatgtc |
319 |
Q |
| |
|
|| |||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3564021 |
accattgcgagataagagctcagggaagacacatcccaaggcacccaacatagcccatctactgtggatgacctcgagttcacggtttttggcaaatgtc |
3563922 |
T |
|
| Q |
320 |
tctg |
323 |
Q |
| |
|
|||| |
|
|
| T |
3563921 |
tctg |
3563918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 3569869 - 3569566
Alignment:
| Q |
20 |
tagagtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacaccccaaatagcaaggatgc |
119 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||| | |||||||||||||| || || || |||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
3569869 |
tagagtggatcgactacctcgcctagaggtccaccagcaatacggtaaccctccacggcgcccattaagataacttggactgcccatatagcaaggatgc |
3569770 |
T |
|
| Q |
120 |
tttgttcatggactaggcttgggttacccaagtagtcaagtccaccctcaataaagatttgagattctgccttaaaccatatagcctcaccgaatttcac |
219 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| ||||| | ||||||||||||| || |
|
|
| T |
3569769 |
tttgtgcatggactagacttgggttacccaagtagtcaagtccaccctcactaaagatttgggatcctgccttgaaccacacggcctcaccgaattgtac |
3569670 |
T |
|
| Q |
220 |
acaattgtgagccaagagctctgggaagacacatcctaaggcacccaacatagcccatctactgtggatgacctcgagttcatggtttttggcaaatgtc |
319 |
Q |
| |
|
|| |||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
3569669 |
accattgcgagataagagctcagggaagacacatcccaaggcacccaacatagcccatctactgtggatgacctcgagttcacggttcttggcaaatgtc |
3569570 |
T |
|
| Q |
320 |
tctg |
323 |
Q |
| |
|
|||| |
|
|
| T |
3569569 |
tctg |
3569566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 3572916 - 3572627
Alignment:
| Q |
20 |
tagagtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacaccccaaatagcaaggatgc |
119 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| | |||||||| ||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
3572916 |
tagagtgggtcgacaacctcaccgagaggtccacctgcaatacgataaccctcaacagcacccattaagataacttggacagcccatatagcaaggatgc |
3572817 |
T |
|
| Q |
120 |
tttgttcatggactaggcttgggttacccaagtagtcaagtccaccctcaataaagatttgagattctgccttaaaccatatagcctcaccgaatttcac |
219 |
Q |
| |
|
||||| |||||||||| ||||| || |||||||||||||||||||||||| |||||||||||||| ||||||| ||||| | |||||||||||||| || |
|
|
| T |
3572816 |
tttgtgcatggactagacttggatttcccaagtagtcaagtccaccctcactaaagatttgagatcctgccttgaaccacacggcctcaccgaatttaac |
3572717 |
T |
|
| Q |
220 |
acaattgtgagccaagagctctgggaagacacatcctaaggcacccaacatagcccatctactgtggatgacctcgagttcatggttttt |
309 |
Q |
| |
|
|| |||| ||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||| |||||||| |||||| ||||||| |
|
|
| T |
3572716 |
accattgcgagccaagagctcagggaagacacatcccaaggctcccaacatagcccacctactgtgaatgacctctagttcacggttttt |
3572627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 3578056 - 3577894
Alignment:
| Q |
20 |
tagagtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacaccccaaatagcaaggatgc |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
3578056 |
tagagtggatcgactacctcaccaagaggtccatcggcaatacggtaaccctcaacagctcccattaagatagctaggacaacccaaatagcaaggatgc |
3577957 |
T |
|
| Q |
120 |
tttgttcatggactaggcttgggttacccaagtagtcaagtccaccctcaataaagatttgag |
182 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||| || || ||| |||||||||||| |
|
|
| T |
3577956 |
tttgtgcgtggactaggcttgggttacccaagtagtcaagccctccatcactaaagatttgag |
3577894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 13276147 - 13275987
Alignment:
| Q |
20 |
tagagtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacaccccaaatagcaaggatgc |
119 |
Q |
| |
|
||||||||||| | |||||||||||||||||| | |||||||||||||| |||||||| ||||| |||||||||||| |||| || |||||||||| |
|
|
| T |
13276147 |
tagagtgggtcaatcacctcaccaagaggtccaccagcaatacggtaaccctcaacagcacccatcaagataacttggcaggcccatatggcaaggatgc |
13276048 |
T |
|
| Q |
120 |
tttgttcatggactaggcttgggttacccaagtagtcaagtccaccctcaataaagatttg |
180 |
Q |
| |
|
||||| |||| || || |||||||| ||||| ||||| || ||||||||| |||||||||| |
|
|
| T |
13276047 |
tttgtgcatgtacaagacttgggttgcccaaatagtctagcccaccctcactaaagatttg |
13275987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 13275903 - 13275846
Alignment:
| Q |
266 |
aacatagcccatctactgtggatgacctcgagttcatggtttttggcaaatgtctctg |
323 |
Q |
| |
|
||||| ||||||||| |||||| ||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
13275903 |
aacatggcccatctagagtggataacctcaagttcacggttttttgcaaatgtctctg |
13275846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 23 - 323
Target Start/End: Complemental strand, 38357233 - 38356933
Alignment:
| Q |
23 |
agtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacaccccaaatagcaaggatgcttt |
122 |
Q |
| |
|
|||||||| || |||||||||||||| ||| | ||||||||||||||||||||||| ||||| |||||||||||| | |||| || ||||| ||||| | |
|
|
| T |
38357233 |
agtgggtcaacaacctcaccaagaggaccaccagcaatacggtaaccttcaacagcgcccatcaagataacttgggtagcccagatggcaagaatgctct |
38357134 |
T |
|
| Q |
123 |
gttcatggactaggcttgggttacccaagtagtcaagtccaccctcaataaagatttgagattctgccttaaaccatatagcctcaccgaatttcacaca |
222 |
Q |
| |
|
| ||||||| | |||||||||||||||||||||||||||||||| ||||||| || ||| | ||||| ||||||| ||||||||||||||| |||| |
|
|
| T |
38357133 |
gagcatggaccaaacttgggttacccaagtagtcaagtccaccctcgctaaagatctgggatccggccttgaaccatacagcctcaccgaatttaacacc |
38357034 |
T |
|
| Q |
223 |
attgtgagccaagagctctgggaagacacatcctaaggcacccaacatagcccatctactgtggatgacctcgagttcatggtttttggcaaatgtctct |
322 |
Q |
| |
|
|||| ||| ||| ||||||||||| |||||||| ||||| |||||||||||||| ||||| |||||||| || |||||| |||| ||||| ||||||||| |
|
|
| T |
38357033 |
attgcgagacaaaagctctgggaaaacacatcccaaggctcccaacatagcccacctactatggatgacttcaagttcacggttcttggcgaatgtctct |
38356934 |
T |
|
| Q |
323 |
g |
323 |
Q |
| |
|
| |
|
|
| T |
38356933 |
g |
38356933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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