View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_low_24 (Length: 321)
Name: NF20174_low_24
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 44286928 - 44287233
Alignment:
| Q |
18 |
aagacttgatttttggtgtttgagcagatataaataagggataatcaattgatgaaagttatagaaggatttaaatgtatgtctagttatccaaattcac |
117 |
Q |
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| T |
44286928 |
aagacttgatttttggtgtttgagcagatataaataagggataatcaaatgatgaaagttatagaaggatttaaatgtatgtctagttatccaaattcac |
44287027 |
T |
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| Q |
118 |
gta------------caatgttagaagcatttagtaattaaaaagaacaaggccacaggaaaaaacatacagacagtagcaataaacacaaaagcaagac |
205 |
Q |
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| T |
44287028 |
gtaatgatactgttacaatgttagaagcatttagtaattaaaaagaacaaggccacaggaaaaaacatacagacagtagcaataaacacaaaagcaagac |
44287127 |
T |
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| Q |
206 |
ttccaaaaccacaccaacacctccacatgcagcatgaatagttgaaactttgcaactccaattatgacaatctttgggtccccaaagtacaacttaatga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44287128 |
ttccaaaaccacaccaacacctccacatgcagcatgaatagttgaaactttgcaactccaattatgacaatcttcgggtccccaaagtacaacttaatga |
44287227 |
T |
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| Q |
306 |
cctttg |
311 |
Q |
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|||||| |
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| T |
44287228 |
cctttg |
44287233 |
T |
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