View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20174_low_25 (Length: 317)

Name: NF20174_low_25
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20174_low_25
NF20174_low_25
[»] chr8 (21 HSPs)
chr8 (26-157)||(42274969-42275100)
chr8 (26-154)||(2112791-2112919)
chr8 (26-157)||(1605969-1606100)
chr8 (26-155)||(43605320-43605449)
chr8 (26-160)||(4655041-4655175)
chr8 (31-157)||(29260237-29260363)
chr8 (26-156)||(40265237-40265367)
chr8 (26-154)||(28619843-28619971)
chr8 (26-156)||(9457541-9457671)
chr8 (26-155)||(41386826-41386956)
chr8 (26-155)||(35142041-35142170)
chr8 (26-161)||(10802727-10802862)
chr8 (26-150)||(7148050-7148168)
chr8 (31-160)||(30382635-30382764)
chr8 (30-159)||(37567323-37567452)
chr8 (31-136)||(4302769-4302874)
chr8 (26-109)||(8502676-8502760)
chr8 (26-155)||(40013428-40013555)
chr8 (31-155)||(9209035-9209159)
chr8 (40-102)||(14061598-14061660)
chr8 (117-157)||(17790433-17790473)
[»] chr5 (4 HSPs)
chr5 (31-159)||(40410585-40410713)
chr5 (26-161)||(17518420-17518556)
chr5 (31-152)||(10571113-10571234)
chr5 (31-156)||(6828753-6828878)
[»] chr2 (12 HSPs)
chr2 (26-154)||(29940945-29941073)
chr2 (26-148)||(45546937-45547059)
chr2 (26-163)||(6289457-6289592)
chr2 (26-157)||(20157713-20157844)
chr2 (31-156)||(11534833-11534958)
chr2 (26-108)||(45485408-45485489)
chr2 (26-156)||(34028889-34029019)
chr2 (26-109)||(24193594-24193677)
chr2 (31-157)||(11998378-11998504)
chr2 (31-143)||(24193447-24193559)
chr2 (38-156)||(2288459-2288575)
chr2 (121-162)||(21736656-21736697)
[»] chr7 (11 HSPs)
chr7 (26-156)||(151856-151986)
chr7 (26-156)||(27418598-27418728)
chr7 (26-156)||(47915013-47915143)
chr7 (26-150)||(30110807-30110931)
chr7 (26-147)||(43057637-43057758)
chr7 (31-109)||(35090067-35090145)
chr7 (31-156)||(40097092-40097217)
chr7 (31-109)||(39301206-39301284)
chr7 (118-161)||(43057836-43057879)
chr7 (121-160)||(12253442-12253481)
chr7 (121-157)||(33474515-33474551)
[»] chr3 (20 HSPs)
chr3 (26-156)||(36054963-36055093)
chr3 (31-159)||(26555809-26555937)
chr3 (156-310)||(29722297-29722453)
chr3 (26-159)||(19552104-19552237)
chr3 (26-155)||(24150788-24150917)
chr3 (26-153)||(35730933-35731060)
chr3 (31-154)||(50900408-50900531)
chr3 (26-158)||(30588835-30588967)
chr3 (31-152)||(26293528-26293649)
chr3 (26-155)||(38629756-38629885)
chr3 (26-157)||(26005939-26006070)
chr3 (26-156)||(52024155-52024286)
chr3 (26-156)||(13662546-13662676)
chr3 (26-155)||(53184029-53184158)
chr3 (31-157)||(27593149-27593275)
chr3 (26-154)||(38682426-38682553)
chr3 (26-157)||(46252159-46252290)
chr3 (31-143)||(36785982-36786094)
chr3 (29-109)||(39338256-39338336)
chr3 (117-155)||(45926996-45927034)
[»] chr4 (20 HSPs)
chr4 (26-155)||(8583961-8584090)
chr4 (26-157)||(44929874-44930005)
chr4 (26-163)||(8880435-8880572)
chr4 (31-163)||(25935777-25935910)
chr4 (31-151)||(52109409-52109529)
chr4 (26-157)||(7820093-7820224)
chr4 (31-156)||(40143774-40143899)
chr4 (26-156)||(3435913-3436038)
chr4 (30-152)||(26336079-26336201)
chr4 (31-155)||(54509713-54509837)
chr4 (31-157)||(45332663-45332789)
chr4 (26-153)||(47685145-47685272)
chr4 (84-156)||(42218418-42218490)
chr4 (31-143)||(42720730-42720842)
chr4 (31-75)||(45340435-45340479)
chr4 (117-155)||(35261614-35261652)
chr4 (117-156)||(33450184-33450223)
chr4 (117-163)||(28847149-28847195)
chr4 (117-155)||(41761978-41762016)
chr4 (121-158)||(56397439-56397476)
[»] chr1 (12 HSPs)
chr1 (26-155)||(26882782-26882911)
chr1 (26-156)||(45318458-45318588)
chr1 (26-154)||(52705393-52705521)
chr1 (31-156)||(36402245-36402370)
chr1 (26-155)||(1928360-1928489)
chr1 (31-155)||(10896799-10896923)
chr1 (31-152)||(29208757-29208878)
chr1 (30-154)||(9831299-9831423)
chr1 (26-157)||(33243266-33243397)
chr1 (26-157)||(33263439-33263570)
chr1 (26-82)||(45534880-45534934)
chr1 (117-154)||(34772311-34772348)
[»] scaffold0016 (1 HSPs)
scaffold0016 (26-156)||(81738-81868)
[»] scaffold0237 (1 HSPs)
scaffold0237 (26-156)||(21369-21499)
[»] chr6 (7 HSPs)
chr6 (26-156)||(29834241-29834371)
chr6 (26-156)||(29865675-29865805)
chr6 (26-160)||(6476669-6476803)
chr6 (26-156)||(3110241-3110371)
chr6 (26-156)||(30877850-30877980)
chr6 (26-154)||(7858330-7858457)
chr6 (31-155)||(10643975-10644099)
[»] scaffold0153 (1 HSPs)
scaffold0153 (48-161)||(34780-34893)
[»] scaffold0202 (1 HSPs)
scaffold0202 (26-109)||(16498-16583)


Alignment Details
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 42275100 - 42274969
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||       |||||||||    
T  42275100 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaaatcttttaaa 42275001  T
Q  126 atcctttgaaaactcaatccaatacaccccct 157  Q
    ||||||||||| ||||||||||||||||||||    
T  42275000 atcctttgaaatctcaatccaatacaccccct 42274969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 2112919 - 2112791
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||       |||||||||    
T  2112919 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaagtcttttaaa 2112820  T
Q  126 atcctttgaaaactcaatccaatacaccc 154  Q
    ||||||||||| |||||||||||||||||    
T  2112819 atcctttgaaatctcaatccaatacaccc 2112791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 1605969 - 1606100
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||       |||||||||    
T  1605969 tcttgaaaatcttaattgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaagtcttttaaa 1606068  T
Q  126 atcctttgaaaactcaatccaatacaccccct 157  Q
    ||||||||||| ||||||||||||||||||||    
T  1606069 atcctttgaaatctcaatccaatacaccccct 1606100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 43605320 - 43605449
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||       |||||||||    
T  43605320 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaagtcttttaaa 43605419  T
Q  126 atcctttgaaaactcaatccaatacacccc 155  Q
    ||||||||||| ||||||||||||| ||||    
T  43605420 atcctttgaaatctcaatccaatacccccc 43605449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 4655175 - 4655041
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| ||||       |||||||||    
T  4655175 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattaaataccacaagacttttattaaacaaaaaaatcttttaaa 4655076  T
Q  126 atcctttgaaaactcaatccaatacacccccttaa 160  Q
    || |||||||| |||||||||||||||||||||||    
T  4655075 attctttgaaatctcaatccaatacacccccttaa 4655041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 29260237 - 29260363
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||    
T  29260237 aaaatcctaattgaatatcacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaagtcttttaaaatcct 29260336  T
Q  131 ttgaaaactcaatccaatacaccccct 157  Q
    || ||| ||||||||||||||||||||    
T  29260337 ttaaaatctcaatccaatacaccccct 29260363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 40265237 - 40265367
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||       |||||||||    
T  40265237 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaatatcacaagacttttataaaacaaaaaagtcttttaaa 40265336  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    |||||||||||  ||||||||||||||||||    
T  40265337 atcctttgaaatttcaatccaatacaccccc 40265367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 28619971 - 28619843
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||||       |||||||||    
T  28619971 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttaattgaataccacaaaacttttataaaacaaaaaagtcttttaaa 28619872  T
Q  126 atcctttgaaaactcaatccaatacaccc 154  Q
    ||||||||||| |||||||||||||||||    
T  28619871 atcctttgaaatctcaatccaatacaccc 28619843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 9457671 - 9457541
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||| |||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||       |||||||||    
T  9457671 tcttgaaaattctaaatgaataccacaagaatgttttacattccttcaaaatcttgattgaataccacaagacttttataaaacaaaaatgtcttttaaa 9457572  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    ||||||||||| ||||||| |||||||||||    
T  9457571 atcctttgaaatctcaatcgaatacaccccc 9457541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 41386826 - 41386956
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaac-nnnnnnntcttttaa 124  Q
    |||| ||||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||        ||||||||    
T  41386826 tcttgaaaatcctaattgaataccacaacaatgttatacattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaaaatcttttaa 41386925  T
Q  125 aatcctttgaaaactcaatccaatacacccc 155  Q
    |||| ||||||| ||||||||||||||||||    
T  41386926 aatcttttgaaatctcaatccaatacacccc 41386956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 35142170 - 35142041
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||| |||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||       |||||||||    
T  35142170 tcttgaaaatcctaattgaataccacaaaaatgttttacattccttaaaaattttgattgaataccacaagacttttttaaaacgaaaaagtcttttaaa 35142071  T
Q  126 atcctttgaaaactcaatccaatacacccc 155  Q
    |||| || ||| ||||||||||||||||||    
T  35142070 atccattaaaatctcaatccaatacacccc 35142041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 10802727 - 10802862
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||| |||||||||||||||||   ||||||||||||| ||||||||| |||||||||||||||        |||||||||    
T  10802727 tcttgaaaatcctaattgaatactacaagaatgttttacattttttaaaaatcttgattgaataccagaagacttttataaaataaaaaagtcttttaaa 10802826  T
Q  126 atcctttgaaaactcaatccaatacacccccttaat 161  Q
    ||  ||||||| |||||| |||||||||||||||||    
T  10802827 attatttgaaatctcaattcaatacacccccttaat 10802862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 7148168 - 7148050
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||      |||| ||||||||||||||||||||||||||       |||||||||    
T  7148168 tcttgaaaatcctaattgaatgccacaagaatgttttacattcctta------ttgattgaataccacaagacttttataaaacaaaaaagtcttttaaa 7148075  T
Q  126 atcctttgaaaactcaatccaatac 150  Q
    ||||||||||| |||||||||||||    
T  7148074 atcctttgaaatctcaatccaatac 7148050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 30382635 - 30382764
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    ||||||||||||||||||||||||||||||||| || ||||| || |||||| ||||||||  |||||||||  |||||       ||||||||||||||    
T  30382635 aaaatcctaattgaataccacaagaatgttttagattccttagaagtcttgattgaatacctaaagactttttaaaaacaaaaaagtcttttaaaatcct 30382734  T
Q  131 ttgaaaactcaatccaatacacccccttaa 160  Q
    |||||| ||||||  |||||||||||||||    
T  30382735 ttgaaatctcaattgaatacacccccttaa 30382764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 37567323 - 37567452
Alignment:
Q  30 aaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcc 129  Q
    |||||||||||||||||||||||||||||||||| || |||||||| |||| | ||||||||  ||||||||| ||||||       ||||||||||||     
T  37567323 aaaaatcctaattgaataccacaagaatgttttagattccttaaaagtcttaattgaatacctaaagacttttttaaaacaaaaaaatcttttaaaatct 37567422  T
Q  130 tttgaaaactcaatccaatacaccccctta 159  Q
    ||||||| ||||||  ||||||||||||||    
T  37567423 tttgaaatctcaattgaatacaccccctta 37567452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 4302769 - 4302874
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    ||||||||||||||||||||||||||||||||| || |||||| | |||||| ||||||||  ||||||||| ||||||       ||||||||||||||    
T  4302769 aaaatcctaattgaataccacaagaatgttttagattccttaacagtcttgattgaatacctaaagacttttttaaaacaaaaaagtcttttaaaatcct 4302868  T
Q  131 ttgaaa 136  Q
    ||||||    
T  4302869 ttgaaa 4302874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 8502760 - 8502676
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttaca-tgccttaaaaatcttgaatgaataccacaagacttttataaaac 109  Q
    |||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| | | ||||||||||||||||| ||||||    
T  8502760 tcttgaaaatcctaattgaataccacaagaatgttttacattcccttaaaaatcttaattaaataccacaagacttttttaaaac 8502676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 40013428 - 40013555
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||| ||||||||| ||||||||||||| |||||||||| |||| |||||| ||||| |||||| ||||||       |||||||||    
T  40013428 tcttgaaaatcctaattaaataccacatgaatgttttacattccttaaaaattttgattgaata-cacaa-acttttttaaaacaaaaaagtcttttaaa 40013525  T
Q  126 atcctttgaaaactcaatccaatacacccc 155  Q
    || |||||||| ||| ||||||||||||||    
T  40013526 attctttgaaatctccatccaatacacccc 40013555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 9209159 - 9209035
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    |||||| |||||||||||||||| ||||||||| || |||||||| |||||| | ||||||  || |||||| ||||||       ||||||||||| ||    
T  9209159 aaaatcttaattgaataccacaaaaatgttttagattccttaaaagtcttgattcaatacctaaatacttttttaaaacaaaaaagtcttttaaaattct 9209060  T
Q  131 ttgaaaactcaatccaatacacccc 155  Q
    |||||| |||||| |||||||||||    
T  9209059 ttgaaatctcaattcaatacacccc 9209035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 14061660 - 14061598
Alignment:
Q  40 attgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagactttt 102  Q
    |||||||||||||||| |  |||| || |  |||||||||||| |||||||||||||||||||    
T  14061660 attgaataccacaagatttatttatattctataaaaatcttgattgaataccacaagactttt 14061598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 17790473 - 17790433
Alignment:
Q  117 tcttttaaaatcctttgaaaactcaatccaatacaccccct 157  Q
    ||||||||||||  |||||| ||||||||||||||||||||    
T  17790473 tcttttaaaatctcttgaaatctcaatccaatacaccccct 17790433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 40410713 - 40410585
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||     
T  40410713 aaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaagtcttttaaaatcca 40410614  T
Q  131 ttgaaaactcaatccaatacaccccctta 159  Q
    |||||| ||||||||||||||||||||||    
T  40410613 ttgaaatctcaatccaatacaccccctta 40410585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 17518556 - 17518420
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||       |||||||||    
T  17518556 tcttgaaaatcctaattgaatagcacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttttaaaacgaaaaagtcttttaaa 17518457  T
Q  126 atcctttgaaaactcaatccaataca-cccccttaat 161  Q
    |||| |||||| ||||||| |||||| ||||||||||    
T  17518456 atccattgaaatctcaatctaatacatcccccttaat 17518420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 10571234 - 10571113
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||||||||||       | |||||||||||     
T  10571234 aaaatcctaattgaataccacaagaatgttttacattccttaaaaattttgattgaatatcacaagacttttataaaacgaaaaagttttttaaaatcca 10571135  T
Q  131 ttgaaaactcaatccaatacac 152  Q
    |||||| |||||||||||||||    
T  10571134 ttgaaatctcaatccaatacac 10571113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 6828753 - 6828878
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    |||||||||||| |||||||||||||||||||| || |||||||  |||||| ||||||||  ||||||||| ||||||       ||||||||||||||    
T  6828753 aaaatcctaattaaataccacaagaatgttttagattccttaaaggtcttgattgaatacccaaagacttttttaaaacaaaaaagtcttttaaaatcct 6828852  T
Q  131 ttgaaaactcaatccaatacaccccc 156  Q
    |||||| ||||||  |||||||||||    
T  6828853 ttgaaatctcaattgaatacaccccc 6828878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 29941073 - 29940945
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||       |||||||||    
T  29941073 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaagtcttttaaa 29940974  T
Q  126 atcctttgaaaactcaatccaatacaccc 154  Q
    ||||||||||| |||||||||||||||||    
T  29940973 atcctttgaaatctcaatccaatacaccc 29940945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 45547059 - 45546937
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||       |||||||||    
T  45547059 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaagtcttttaaa 45546960  T
Q  126 atcctttgaaaactcaatccaat 148  Q
    || |||||||| |||||||||||    
T  45546959 attctttgaaatctcaatccaat 45546937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 6289457 - 6289592
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||  | |||||| ||||| |||||||||||||       | |||||||    
T  6289457 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatct--attgaatatcacaaaacttttataaaacaaaaaagttttttaaa 6289554  T
Q  126 atcctttgaaaactcaatccaatacacccccttaatct 163  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  6289555 atcctttgaaatctcaatccaatacaccccctaaatct 6289592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 20157713 - 20157844
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||  ||||||| | ||||||       |||||||||    
T  20157713 tcttgaaaatcctaattgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttctttaaaacaaaaaagtcttttaaa 20157812  T
Q  126 atcctttgaaaactcaatccaatacaccccct 157  Q
    ||||||||||| ||||||  ||||||||||||    
T  20157813 atcctttgaaatctcaattgaatacaccccct 20157844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 11534958 - 11534833
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    |||||||||||| |||||||||||||||||||| || |||||||| |||||| ||||||||  ||||||||| ||||||       ||||||||||||||    
T  11534958 aaaatcctaattaaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaacaaaaaagtcttttaaaatcct 11534859  T
Q  131 ttgaaaactcaatccaatacaccccc 156  Q
    |||||| ||||||  |||||||||||    
T  11534858 ttgaaatctcaattgaatacaccccc 11534833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 45485489 - 45485408
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaa 108  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||||||||||    
T  45485489 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaata-cacaagatttttataaaa 45485408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 34028889 - 34029019
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||  ||||||||| ||||||       |||||||||    
T  34028889 tcttgaaaatcctaattgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaacaaaaaagtcttttaaa 34028988  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    |||||||||||  ||| |  |||||||||||    
T  34028989 atcctttgaaatatcagttgaatacaccccc 34029019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 24193677 - 24193594
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaac 109  Q
    |||| ||||||||||||||||||||||| ||||||||| || ||||||||||||||| |||||||| |||||||||| ||||||    
T  24193677 tcttgaaaatcctaattgaataccacaaaaatgttttatattccttaaaaatcttgattgaataccccaagacttttttaaaac 24193594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 11998378 - 11998504
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    |||||||||||||||||| |||||||||||||| || |||||||| |||||| ||||||||  || || ||| ||||||       ||||||||||||||    
T  11998378 aaaatcctaattgaatacgacaagaatgttttagattccttaaaagtcttgattgaatacctaaaaacatttttaaaacaaaaaagtcttttaaaatcct 11998477  T
Q  131 ttgaaaactcaatccaatacaccccct 157  Q
    |||||| ||||||  |||| |||||||    
T  11998478 ttgaaatctcaattgaatataccccct 11998504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 24193447 - 24193559
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    ||||| ||||||||||| ||||||||||||||| ||  ||||||| |||||  ||||||||  || |||||| ||||||       ||||| |||||| |    
T  24193447 aaaattctaattgaatatcacaagaatgttttagatttcttaaaagtcttgtttgaatacctaaaaacttttttaaaacaaaaatgtctttaaaaatctt 24193546  T
Q  131 ttgaaaactcaat 143  Q
    |||||| ||||||    
T  24193547 ttgaaatctcaat 24193559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 2288575 - 2288459
Alignment:
Q  38 taattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcctttgaaaa 137  Q
    |||||||||||||||||| |  |||||||    ||||| |||||| |||||||||| |||||||||||| |        ||||||||||||| |||||      
T  2288575 taattgaataccacaagatttgtttacattttataaaagtcttgattgaataccactagacttttataata--aaaaagtcttttaaaatcccttgaatt 2288478  T
Q  138 ctcaatccaatacaccccc 156  Q
    |||||| ||||||||||||    
T  2288477 ctcaattcaatacaccccc 2288459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 21736656 - 21736697
Alignment:
Q  121 ttaaaatcctttgaaaactcaatccaatacacccccttaatc 162  Q
    |||||||||||||||| |||||| ||||||||||||| ||||    
T  21736656 ttaaaatcctttgaaatctcaattcaatacaccccctaaatc 21736697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 151986 - 151856
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||       |||||||||    
T  151986 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaatatcacaagacttttataaaacaaaaaagtcttttaaa 151887  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    ||||||||||| |||||||||||||||||||    
T  151886 atcctttgaaatctcaatccaatacaccccc 151856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 27418598 - 27418728
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||       |||||||||    
T  27418598 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaagtcttttaaa 27418697  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    ||||||||||| ||||||||| |||||||||    
T  27418698 atcctttgaaatctcaatccagtacaccccc 27418728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 47915013 - 47915143
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||||||||||||||||||||||||       |||||||||    
T  47915013 tcttgaaaatcctaattgaataccacaagaatgttttacattccttcaaaatcttaattgaataccacaagacttttataaaacaaaaaagtcttttaaa 47915112  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    ||||| ||||| |||||||||||||||||||    
T  47915113 atcctatgaaatctcaatccaatacaccccc 47915143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 30110931 - 30110807
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||       |||||||||    
T  30110931 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttaattgaatactacaagacttttataaaacaaaaaagtcttttaaa 30110832  T
Q  126 atcctttgaaaactcaatccaatac 150  Q
    || |||||||| |||||||||||||    
T  30110831 attctttgaaatctcaatccaatac 30110807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 43057637 - 43057758
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||| || |  ||||| |||||||||||||||||||       |||||||||    
T  43057637 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatattaatagaataacacaagacttttataaaacaaaaaagtcttttaaa 43057736  T
Q  126 atcctttgaaaactcaatccaa 147  Q
    ||||||||||| ||||||||||    
T  43057737 atcctttgaaatctcaatccaa 43057758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 35090067 - 35090145
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaac 109  Q
    ||||||||||||||||||||||||||||||||| || |||||||||| |||| ||||||||||||||||||||||||||    
T  35090067 aaaatcctaattgaataccacaagaatgttttatattccttaaaaattttgattgaataccacaagacttttataaaac 35090145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 40097217 - 40097092
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    |||||| |||||||||||||||||||||||||| || |||||||| |||||| ||||||||  ||||||||| ||||||       ||||||||||||||    
T  40097217 aaaatcataattgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaacaaaaaagtcttttaaaatcct 40097118  T
Q  131 ttgaaaactcaatccaatacaccccc 156  Q
    |||||| ||||||  |||||||||||    
T  40097117 ttgaaatctcaattgaatacaccccc 40097092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 39301206 - 39301284
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaac 109  Q
    ||||||||||||||||||||||||||||||||| || |||||||| |||||| | ||||||  ||||||||| ||||||    
T  39301206 aaaatcctaattgaataccacaagaatgttttagattccttaaaagtcttgattaaatacctaaagacttttttaaaac 39301284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 43057836 - 43057879
Alignment:
Q  118 cttttaaaatcctttgaaaactcaatccaatacacccccttaat 161  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  43057836 cttttaaaatcctttgaaatctcaatccaatacacccccttaat 43057879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 160
Target Start/End: Original strand, 12253442 - 12253481
Alignment:
Q  121 ttaaaatcctttgaaaactcaatccaatacacccccttaa 160  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  12253442 ttaaaatcctttgaaatctcaattcaatacacccccttaa 12253481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 33474551 - 33474515
Alignment:
Q  121 ttaaaatcctttgaaaactcaatccaatacaccccct 157  Q
    |||||||||||||||| |||||| |||||||||||||    
T  33474551 ttaaaatcctttgaaatctcaattcaatacaccccct 33474515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 36054963 - 36055093
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||       |||||||||    
T  36054963 tcttgaaaatcctaattgaataccacaaaaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaagtcttttaaa 36055062  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    ||||||||||| |||||||||||||||||||    
T  36055063 atcctttgaaatctcaatccaatacaccccc 36055093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 26555937 - 26555809
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    ||||||||||||||||||||||| ||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||    
T  26555937 aaaatcctaattgaataccacaataatattttacattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaagtcttttaaaatcct 26555838  T
Q  131 ttgaaaactcaatccaatacaccccctta 159  Q
    |||||| ||||||||||||||||||||||    
T  26555837 ttgaaatctcaatccaatacaccccctta 26555809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 156 - 310
Target Start/End: Complemental strand, 29722453 - 29722297
Alignment:
Q  156 cttaatctaaccttttcattcaggattcatacatcttgatatagtagtttggtaagaactaatcggatatggttgaatcattaaagag---aaagagaaa 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| ||||||||||||||||   |||||||||    
T  29722453 cttaatctaaccttttcattcaggattcatacatcttgatatagtagtttggtaagtactagttggatatgtttgaatcattaaagagatcaaagagaaa 29722354  T
Q  253 gaattagccacttaatattaaccatattaagtagcagcactattgtttaacttctctg 310  Q
    |||||||| | |||| ||| |||| ||||| |||||| ||||||| ||| ||||||||    
T  29722353 gaattagcaatttaaaatt-accaaattaattagcagaactattgcttatcttctctg 29722297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 19552104 - 19552237
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||        |||||||||    
T  19552104 tcttgaaaatcctaattgaataccacaagaatgttttacatttcttaaaaatcttgattgaataccacaagacttttataaaataaaaaaatcttttaaa 19552203  T
Q  126 atcctttgaaaactcaatccaatacaccccctta 159  Q
    ||||||| ||| ||||||||||||||||||||||    
T  19552204 atcctttaaaatctcaatccaatacaccccctta 19552237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 24150788 - 24150917
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||       |||||||||    
T  24150788 tcttcaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagatttttataaaacaaaaaaatcttttaaa 24150887  T
Q  126 atcctttgaaaactcaatccaatacacccc 155  Q
    ||||||||||| |||||||||||| |||||    
T  24150888 atcctttgaaatctcaatccaatatacccc 24150917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 35731060 - 35730933
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||       |||||||||    
T  35731060 tcttgaaaatcttaattgaataccacaagaatgttttacattccttaaaaatcttgattgaatatcacaagacttttataaaacaaaaaaatcttttaaa 35730961  T
Q  126 atcctttgaaaactcaatccaatacacc 153  Q
    ||||||||||| ||||||||||||||||    
T  35730960 atcctttgaaatctcaatccaatacacc 35730933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 50900408 - 50900531
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||    
T  50900408 aaaatcctaattgaataccacaagaatgttttacattctttaaaaatcttgattgaataccacaagacttttataaaacaaaaaagtcttttaaaatcct 50900507  T
Q  131 ttgaaaactcaatccaatacaccc 154  Q
    |||||| || ||||||||||||||    
T  50900508 ttgaaatcttaatccaatacaccc 50900531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 30588967 - 30588835
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||       |||||||||    
T  30588967 tcttgaaaatcctaattgaataccacaagaatgttttacattctttaaaaatcttgattgaataccacaagacttttataaaacaaaaaagtcttttaaa 30588868  T
Q  126 atcctttgaaaactcaatccaatacaccccctt 158  Q
    ||||||| |||  |||||| |||||||||||||    
T  30588867 atcctttaaaatttcaatctaatacaccccctt 30588835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 26293528 - 26293649
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||       ||||||||||||||    
T  26293528 aaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaaaacttttataaaacaaaaaagtcttttaaaatcct 26293627  T
Q  131 ttgaaaactcaatccaatacac 152  Q
    ||||||  ||||| ||||||||    
T  26293628 ttgaaatttcaattcaatacac 26293649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 38629756 - 38629885
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||       |||||||||    
T  38629756 tcttgaaaatcctaattgaataccacaaaaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaagtcttttaaa 38629855  T
Q  126 atcctttgaaaactcaatccaatacacccc 155  Q
    ||  ||||||| || |||||||||||||||    
T  38629856 attatttgaaatcttaatccaatacacccc 38629885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 26005939 - 26006070
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| |||| ||||| || | ||||||  ||||||||||||||||||       |||||||||    
T  26005939 tcttgaaaatcctaattgaataccacaagaatgttttacattcctttaaaatttttattgaatattacaagacttttataaaacaaaaaagtcttttaaa 26006038  T
Q  126 atcctttgaaaactcaatccaatacaccccct 157  Q
    ||||||||||| ||||||||||||||||||||    
T  26006039 atcctttgaaatctcaatccaatacaccccct 26006070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 52024155 - 52024286
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttat-aaaacnnnnnnntcttttaa 124  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||       ||||||||    
T  52024155 tcttgaaaatcataattgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagactttttttaaaacaaaaaagtcttttaa 52024254  T
Q  125 aatcctttgaaaactcaatccaatacaccccc 156  Q
    |||||||||||| ||||||||||| |||||||    
T  52024255 aatcctttgaaatctcaatccaatgcaccccc 52024286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 13662676 - 13662546
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||||| |||||||| ||||||       |||||||||    
T  13662676 tcttgaaaatcctaattgaataccacgagaatgttttacattccttacaaatcttgattgaataccacgagacttttgtaaaacaaaaaagtcttttaaa 13662577  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    || |||||||| |||||||||||||||||||    
T  13662576 attctttgaaatctcaatccaatacaccccc 13662546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 53184029 - 53184158
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||| |||||||||||||||| | ||||||||||||||| |||||||||| |||||||| ||||||       |||||||||    
T  53184029 tcttgaaaatcctaattgaatagcacaagaatgttttaccttccttaaaaatcttgattgaataccacgagacttttttaaaacaaaaaaatcttttaaa 53184128  T
Q  126 atcctttgaaaactcaatccaatacacccc 155  Q
    |||| |||||| |||||| ||||| |||||    
T  53184129 atccattgaaatctcaattcaatagacccc 53184158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 27593275 - 27593149
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    ||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||  ||||||||| ||||||       ||||||||||||||    
T  27593275 aaaatcctaattgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaacaaaaaaatcttttaaaatcct 27593176  T
Q  131 ttgaaaactcaatccaatacaccccct 157  Q
    |||||| ||||||  ||||||| ||||    
T  27593175 ttgaaatctcaattgaatacactccct 27593149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 38682553 - 38682426
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||| |||||||||||||||| ||| ||||||||  |||||||||||||| |||||||||||||| |||| ||||||       |||||||||    
T  38682553 tcttgaaaatcataattgaataccacaataat-ttttacatttcttaaaaatcttgattgaataccacaagatttttttaaaacaaaaaagtcttttaaa 38682455  T
Q  126 atcctttgaaaactcaatccaatacaccc 154  Q
    ||||||||||| |||||| ||||||||||    
T  38682454 atcctttgaaatctcaatacaatacaccc 38682426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 46252159 - 46252290
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||| ||| |||| ||| ||||||||||||| | |||||||||| |||||| | ||||||       |||||||||    
T  46252159 tcttgaaaatcctaattgaataccacaaaaatattttgcattccttaaaaatcttaattgaataccacgagacttgtttaaaacaaaaaaatcttttaaa 46252258  T
Q  126 atcctttgaaaactcaatccaatacaccccct 157  Q
    ||| ||| ||| |||||||||||||| |||||    
T  46252259 atcatttaaaatctcaatccaatacatcccct 46252290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 36786094 - 36785982
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    ||||| |||||||||| |||||||||||||||| || |||||||| |||||| ||||||||  ||||||||| ||||||       ||||||||||||||    
T  36786094 aaaattctaattgaatgccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaacaaaaaagtcttttaaaatcct 36785995  T
Q  131 ttgaaaactcaat 143  Q
    || ||| ||||||    
T  36785994 ttaaaatctcaat 36785982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 39338256 - 39338336
Alignment:
Q  29 taaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaac 109  Q
    ||||||||||||||||||| ||||||||| ||||| || |||||||| |||| | ||||||||  ||||||||| ||||||    
T  39338256 taaaaatcctaattgaataacacaagaatattttagattccttaaaagtctttattgaatacctaaagacttttttaaaac 39338336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 45926996 - 45927034
Alignment:
Q  117 tcttttaaaatcctttgaaaactcaatccaatacacccc 155  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  45926996 tcttttaaaatcctttaaaatctcaatccaatacacccc 45927034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 8583961 - 8584090
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||        |||||||||    
T  8583961 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaataaaaaagtcttttaaa 8584060  T
Q  126 atcctttgaaaactcaatccaatacacccc 155  Q
    ||||||||||| ||||||||||||||||||    
T  8584061 atcctttgaaatctcaatccaatacacccc 8584090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 44930005 - 44929874
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||||||       | |||||||    
T  44930005 tcttgaaaatcctaattgaataccacaagaatattttatattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaagtattttaaa 44929906  T
Q  126 atcctttgaaaactcaatccaatacaccccct 157  Q
    ||| ||| ||| ||||||||||||||||||||    
T  44929905 atcttttaaaatctcaatccaatacaccccct 44929874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 8880572 - 8880435
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaat-gaataccacaagacttttataaaacnnnnnnntcttttaa 124  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||| |||||||||||       ||||||||    
T  8880572 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttaattggaataccacaagatttttataaaacaaaaaagtcttttaa 8880473  T
Q  125 aatcctttgaaaactcaatccaatacacccccttaatct 163  Q
    |||||||||||| || |||||||||||||||| ||||||    
T  8880472 aatcctttgaaatct-aatccaatacacccccctaatct 8880435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 25935910 - 25935777
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaa-cnnnnnnntcttttaaaatcc 129  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||| || ||||||||||||         |||||||||||||    
T  25935910 aaaatcctaattgaatatcacaagaatgttttacattccttaaaaatcttgattgaataccataaaacttttataaaataaaaaaagtcttttaaaatcc 25935811  T
Q  130 tttgaaaactcaatccaatacacccccttaatct 163  Q
    ||||||| |||||||||||||||||||| |||||    
T  25935810 tttgaaatctcaatccaatacaccccctaaatct 25935777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 52109529 - 52109409
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||       ||||||||||| ||    
T  52109529 aaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagatttttataaaacaaaaaagtcttttaaaatact 52109430  T
Q  131 ttgaaaactcaatccaataca 151  Q
    || ||| || |||| ||||||    
T  52109429 ttaaaatctaaatctaataca 52109409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 7820224 - 7820093
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||| ||||||||| || |||| ||||| ||||  ||||||||||| |||||||||||||       |||||||||    
T  7820224 tcttgaaaatcctaattgaataccacaaaaatgttttagattccttgaaaattttgatggaataccacaaaacttttataaaacaaataagtcttttaaa 7820125  T
Q  126 atcctttgaaaactcaatccaatacaccccct 157  Q
    ||| ||||||| |||||||||||| |||||||    
T  7820124 atcatttgaaatctcaatccaatataccccct 7820093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 40143899 - 40143774
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    ||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||  ||||||||| ||||||       |||||||||||| |    
T  40143899 aaaatcctaattgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaacaaaaaagtcttttaaaatctt 40143800  T
Q  131 ttgaaaactcaatccaatacaccccc 156  Q
    |||||| ||||||  |||||||||||    
T  40143799 ttgaaatctcaattgaatacaccccc 40143774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 3435913 - 3436038
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||||||| |||||| ||||||||     |||||||||||||       |||||||||    
T  3435913 tcttgaaaatcctaattgaataccacaagattgttttacattccttaaaattcttgattgaatacc-----acttttataaaacaaaaaagtcttttaaa 3436007  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    ||||||| ||| |||||||||||| ||||||    
T  3436008 atcctttaaaatctcaatccaataaaccccc 3436038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 26336201 - 26336079
Alignment:
Q  30 aaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcc 129  Q
    |||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||  ||||| ||| ||||||       |||||||||||||    
T  26336201 aaaaatcctaattgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacatttttaaaacaaaaaagtcttttaaaatcc 26336102  T
Q  130 tttgaaaactcaatccaatacac 152  Q
    ||||||| ||||||  |||||||    
T  26336101 tttgaaatctcaattgaatacac 26336079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 54509837 - 54509713
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    ||||||||||||||||| ||||||||| ||||| || |||||||| |||||| ||||||||  ||||||||| ||||||       ||||||||||||||    
T  54509837 aaaatcctaattgaatatcacaagaatattttagattccttaaaagtcttgattgaatacctaaagacttttttaaaacaaaaaagtcttttaaaatcct 54509738  T
Q  131 ttgaaaactcaatccaatacacccc 155  Q
    |||||| ||||||  ||||||||||    
T  54509737 ttgaaatctcaattgaatacacccc 54509713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 45332789 - 45332663
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    ||||||||||||||||||||||||||||||||| || |||||||| | |||| ||||||||  ||||| ||| ||||||       ||||||||||| ||    
T  45332789 aaaatcctaattgaataccacaagaatgttttagattccttaaaagttttgattgaatacctaaagacatttttaaaacaaaaaagtcttttaaaattct 45332690  T
Q  131 ttgaaaactcaatccaatacaccccct 157  Q
    |||||| ||||||  ||||||||||||    
T  45332689 ttgaaatctcaattgaatacaccccct 45332663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 47685272 - 47685145
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||| ||||||||| || |||||||| |||||| ||||||||  |||| |||| ||||||       |||||||||    
T  47685272 tcttgaaaatcctaattgaataccacaaaaatgttttagattccttaaaagtcttgattgaatacctaaagatttttttaaaacaaaaaagtcttttaaa 47685173  T
Q  126 atcctttgaaaactcaatccaatacacc 153  Q
    ||| ||||||| ||||||  ||||||||    
T  47685172 atcttttgaaatctcaattgaatacacc 47685145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 42218418 - 42218490
Alignment:
Q  84 tgaataccacaagacttttataaaacnnnnnnntcttttaaaatcctttgaaaactcaatccaatacaccccc 156  Q
    ||||||||||||||||||||||||||       | |||||||||||||||||| |||||||||||||||||||    
T  42218418 tgaataccacaagacttttataaaacaaaaaagttttttaaaatcctttgaaatctcaatccaatacaccccc 42218490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 42720842 - 42720730
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||| | |||| | ||||||  ||||| ||| ||||||       ||||||||||||||    
T  42720842 aaaatcctaattgaataccacaagaatgttttagattacttaaaagttttgattaaatacctaaagacatttttaaaacaaaaaagtcttttaaaatcct 42720743  T
Q  131 ttgaaaactcaat 143  Q
    || ||| ||||||    
T  42720742 ttaaaatctcaat 42720730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 45340479 - 45340435
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaa 75  Q
    ||||||||||||||||||||||||||||||||| || ||||||||    
T  45340479 aaaatcctaattgaataccacaagaatgttttagattccttaaaa 45340435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 35261652 - 35261614
Alignment:
Q  117 tcttttaaaatcctttgaaaactcaatccaatacacccc 155  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  35261652 tcttttaaaatcctttgaaatctcaatccaatacacccc 35261614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 33450184 - 33450223
Alignment:
Q  117 tcttttaaaatcctttgaaaactcaatccaatacaccccc 156  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  33450184 tcttttaaaatccattgaaatctcaatccaatacaccccc 33450223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 28847149 - 28847195
Alignment:
Q  117 tcttttaaaatcctttgaaaactcaatccaatacacccccttaatct 163  Q
    |||||||||||||||| ||| |||||||||||||| ||||| |||||    
T  28847149 tcttttaaaatcctttaaaatctcaatccaatacatcccctaaatct 28847195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 41762016 - 41761978
Alignment:
Q  117 tcttttaaaatcctttgaaaactcaatccaatacacccc 155  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  41762016 tcttttaaaatcctttaaaatctcaatccaatacacccc 41761978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 56397476 - 56397439
Alignment:
Q  121 ttaaaatcctttgaaaactcaatccaatacaccccctt 158  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  56397476 ttaaaatcctttgaaatctcaattcaatacaccccctt 56397439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 26882782 - 26882911
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||       |||||||||    
T  26882782 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaataacacaagacttttataaaacaaaaaagtcttttaaa 26882881  T
Q  126 atcctttgaaaactcaatccaatacacccc 155  Q
    ||||||||||| ||||||||||||||||||    
T  26882882 atcctttgaaatctcaatccaatacacccc 26882911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 45318588 - 45318458
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||       |||||||||    
T  45318588 tcttgaaaatcctaattgaataccacaataatgttttacattccttaaaaatcttgattgaataccagaagacttttataaaacaaaaaagtcttttaaa 45318489  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    ||||||||||| |||||||||||||||||||    
T  45318488 atcctttgaaatctcaatccaatacaccccc 45318458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 52705521 - 52705393
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||       |||||||||    
T  52705521 tcttgaaaatcctaattgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaaatcttttaaa 52705422  T
Q  126 atcctttgaaaactcaatccaatacaccc 154  Q
    ||| ||||||| ||||||  |||||||||    
T  52705421 atcttttgaaatctcaattgaatacaccc 52705393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 36402370 - 36402245
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    ||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||  ||||||||| ||||||       ||||||||||||||    
T  36402370 aaaatcctaattgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaacaaaaaagtcttttaaaatcct 36402271  T
Q  131 ttgaaaactcaatccaatacaccccc 156  Q
    |||||| ||||||  |||||||||||    
T  36402270 ttgaaatctcaattgaatacaccccc 36402245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 1928360 - 1928489
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||  ||||||||| ||||||       |||||||||    
T  1928360 tcttgaaaatcctaattgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaacaaaaaagtcttttaaa 1928459  T
Q  126 atcctttgaaaactcaatccaatacacccc 155  Q
    ||||||| ||| ||||||  ||||||||||    
T  1928460 atcctttaaaatctcaattgaatacacccc 1928489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 10896923 - 10896799
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    ||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||  ||||||||| |||||        ||||||||||||||    
T  10896923 aaaatcctaattgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaataaaaaaatcttttaaaatcct 10896824  T
Q  131 ttgaaaactcaatccaatacacccc 155  Q
    |||||| ||||||  ||||||||||    
T  10896823 ttgaaatctcaattgaatacacccc 10896799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 29208878 - 29208757
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    ||||||||||||||||||||| ||||||||||| || |||||||| |||||| ||||||||  ||||| ||| ||||||       ||||||||||||||    
T  29208878 aaaatcctaattgaataccaccagaatgttttagattccttaaaagtcttgattgaatacctaaagacatttttaaaacaaaaaagtcttttaaaatcct 29208779  T
Q  131 ttgaaaactcaatccaatacac 152  Q
    |||||| ||||||  |||||||    
T  29208778 ttgaaatctcaattgaatacac 29208757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 9831423 - 9831299
Alignment:
Q  30 aaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcc 129  Q
    ||||||||||||||||||| |||||||||||||| || ||||| || | |||| ||||||||  ||||||||| ||||||       |||||||||||||    
T  9831423 aaaaatcctaattgaatactacaagaatgttttagattccttacaagttttgattgaatacctaaagacttttttaaaacaaaaaagtcttttaaaatcc 9831324  T
Q  130 tttgaaaactcaatccaatacaccc 154  Q
    ||||||| ||||||  |||||||||    
T  9831323 tttgaaatctcaattgaatacaccc 9831299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 33243266 - 33243397
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||||||| ||||| || |||||||| |||||| ||||||||  || |||||| ||||||       |||||||||    
T  33243266 tcttgaaaatcctaattgaataccacaagaatattttagattccttaaaagtcttgattgaatacctaaaaacttttttaaaacaaaaaagtcttttaaa 33243365  T
Q  126 atcctttgaaaactcaatccaatacaccccct 157  Q
    ||| |||||||  |||||  |||||| |||||    
T  33243366 atcttttgaaatttcaattgaatacatcccct 33243397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 33263439 - 33263570
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||||||| ||||| || |||||||| |||||| ||||||||  || |||||| ||||||       |||||||||    
T  33263439 tcttgaaaatcctaattgaataccacaagaatattttagattccttaaaagtcttgattgaatacctaaaaacttttttaaaacaaaaaagtcttttaaa 33263538  T
Q  126 atcctttgaaaactcaatccaatacaccccct 157  Q
    ||| |||||||  |||||  |||||| |||||    
T  33263539 atcttttgaaatttcaattgaatacatcccct 33263570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 45534934 - 45534880
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttga 82  Q
    ||||||||||||||||| |||||||||||||||  |||||| |||||||||||||||    
T  45534934 tcttaaaaatcctaattaaataccacaagaatg--ttacattccttaaaaatcttga 45534880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 34772348 - 34772311
Alignment:
Q  117 tcttttaaaatcctttgaaaactcaatccaatacaccc 154  Q
    |||||||||||||||||||| | |||||||||||||||    
T  34772348 tcttttaaaatcctttgaaatcacaatccaatacaccc 34772311  T

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Target: scaffold0016 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 81738 - 81868
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||       |||||||||    
T  81738 tcttgaaaatcctaattgaatagcacaagaatgttttagattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaagtcttttaaa 81837  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    ||||||| ||| |||||||||||||||||||    
T  81838 atcctttaaaatctcaatccaatacaccccc 81868  T

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Target: scaffold0237 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 21369 - 21499
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||| ||||||| |||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||       |||||||||    
T  21369 tcttgaaaattctaattgcataccacaagaatgttttacattccttcaaaatcttgattgaataccacaagacttttataaaacaaaaatgtcttttaaa 21468  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    ||||||||||| ||||||| |||||||||||    
T  21469 atcctttgaaatctcaatcgaatacaccccc 21499  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 29834241 - 29834371
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||| ||||||| |||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||       |||||||||    
T  29834241 tcttgaaaattctaattgcataccacaagaatgttttacattccttcaaaatcttgattgaataccacaagacttttataaaacaaaaatgtcttttaaa 29834340  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    ||||||||||| ||||||| |||||||||||    
T  29834341 atcctttgaaatctcaatcgaatacaccccc 29834371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 29865675 - 29865805
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||| ||||||| |||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||       |||||||||    
T  29865675 tcttgaaaattctaattgcataccacaagaatgttttacattccttcaaaatcttgattgaataccacaagacttttataaaacaaaaatgtcttttaaa 29865774  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    ||||||||||| ||||||| |||||||||||    
T  29865775 atcctttgaaatctcaatcgaatacaccccc 29865805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 6476669 - 6476803
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||||||||| ||||||||||||  |||||||||||| | |||||||  |||||||||||||||||       |||||||||    
T  6476669 tcttgaaaatcctaattgaataccacaaaaatgttttacatttcttaaaaatcttaattgaatactgcaagacttttataaaacaaaacagtcttttaaa 6476768  T
Q  126 atcctttgaaaactcaatccaatacacccccttaa 160  Q
    |||| ||||||  ||||||||||||||||||||||    
T  6476769 atccattgaaatttcaatccaatacacccccttaa 6476803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 3110241 - 3110371
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||| ||||||||||||||||| |||||||||||| ||||||||||  ||| ||||||||| |||| |||||||||||       |||||||||    
T  3110241 tcttgaaaattctaattgaataccacaaaaatgttttacattccttaaaaattatgattgaataccataagatttttataaaacaaaaaagtcttttaaa 3110340  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    ||  ||||||| || ||||||||||||||||    
T  3110341 atattttgaaatctgaatccaatacaccccc 3110371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 30877980 - 30877850
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| ||||||||||||||||| ||||||||| ||||| || |||||||| |||||| ||||||||  ||||||||| ||||||       |||||||||    
T  30877980 tcttgaaaatcctaattgaatatcacaagaatattttagattccttaaaagtcttgattgaatacctaaagacttttttaaaacaaaaaagtcttttaaa 30877881  T
Q  126 atcctttgaaaactcaatccaatacaccccc 156  Q
    ||||||||||| ||||||  |||||||||||    
T  30877880 atcctttgaaatctcaattgaatacaccccc 30877850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 7858330 - 7858457
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| ||||||| |||||| ||||||       | |||||||    
T  7858330 tcttgaaaatcctaattgaataccacaagaatgttttacattcctttaaaatcttgattgaacaccacaa-acttttttaaaacaaaaaaatattttaaa 7858428  T
Q  126 atcctttgaaaactcaatccaatacaccc 154  Q
    ||| | ||||| |||||| ||||||||||    
T  7858429 atcatatgaaatctcaattcaatacaccc 7858457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 10643975 - 10644099
Alignment:
Q  31 aaaatcctaattgaataccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaacnnnnnnntcttttaaaatcct 130  Q
    ||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||  ||||||||| ||||||       |||||||||||  |    
T  10643975 aaaatcctaattgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaacaaaaaagtcttttaaaatatt 10644074  T
Q  131 ttgaaaactcaatccaatacacccc 155  Q
    |||||| ||||||  ||||||||||    
T  10644075 ttgaaatctcaattgaatacacccc 10644099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 34780 - 34893
Alignment:
Q  48 ccacaagaatgttttacatgccttaaaaatcttgaatgaataccacaagacttttataaaac-nnnnnnntcttttaaaatcctttgaaaactcaatcca 146  Q
    ||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||        | |||||||||||||| ||| |||||||||    
T  34780 ccacaagaatgttttacattccttaaaaatcttgattgaata-cacaagacttttataaaacaaaaaaagtattttaaaatcctttaaaatctcaatcca 34878  T
Q  147 atacacccccttaat 161  Q
    |||||||||||||||    
T  34879 atacacccccttaat 34893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 16498 - 16583
Alignment:
Q  26 tcttaaaaatcctaattgaataccacaagaatgttttacatgcctt--aaaaatcttgaatgaataccacaagacttttataaaac 109  Q
    |||| ||||| ||||||||||||||||| ||||||||||||  |||  ||||||||||| | ||||||||||||||||| ||||||    
T  16498 tcttgaaaatactaattgaataccacaaaaatgttttacatttcttaaaaaaatcttgattaaataccacaagacttttttaaaac 16583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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