View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20174_low_26 (Length: 314)

Name: NF20174_low_26
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20174_low_26
NF20174_low_26
[»] chr1 (3 HSPs)
chr1 (16-130)||(4629791-4629905)
chr1 (200-282)||(4629639-4629721)
chr1 (236-279)||(16856580-16856624)
[»] chr7 (3 HSPs)
chr7 (221-281)||(1471182-1471242)
chr7 (220-279)||(5174444-5174503)
chr7 (194-283)||(4225845-4225934)
[»] chr5 (3 HSPs)
chr5 (190-281)||(4088533-4088623)
chr5 (190-281)||(18695407-18695498)
chr5 (200-277)||(21012665-21012742)
[»] chr3 (3 HSPs)
chr3 (190-281)||(52485562-52485652)
chr3 (248-281)||(23155330-23155363)
chr3 (236-281)||(45754774-45754819)
[»] chr2 (4 HSPs)
chr2 (200-283)||(17394965-17395048)
chr2 (190-280)||(23352800-23352889)
chr2 (219-283)||(5032041-5032105)
chr2 (200-281)||(33725471-33725553)
[»] chr8 (2 HSPs)
chr8 (219-280)||(35564407-35564467)
chr8 (239-283)||(157194-157238)
[»] chr4 (1 HSPs)
chr4 (219-280)||(624204-624265)
[»] chr6 (1 HSPs)
chr6 (219-283)||(33656888-33656952)


Alignment Details
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 4629905 - 4629791
Alignment:
Q  16 agatggtagtaaaaaacaaacgcaacgtatttcgatttcaaccacaaaagagaatgtagtttgcttttatcatgtagttgttgtcgagtttgctcctttt 115  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  4629905 agatggtagtaaaaaataaacgcaacgtatttcgatttcaaccacaaaagagaatgtagtttgcttttatcaggtagttgttttcgagtttgctcctttt 4629806  T
Q  116 gttaaagagagatga 130  Q
    |||||||||| ||||    
T  4629805 gttaaagagaaatga 4629791  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 200 - 282
Target Start/End: Complemental strand, 4629721 - 4629639
Alignment:
Q  200 tttcgtgataatacatacgttttctttgtaaagatgtggttgtcaaataagttatcaatttaatagttgttcaaataacacat 282  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  4629721 tttcgtgataatacctactttttctttgtaaagatgtggttgtcaaataagttgtcaatctaatagttgttcaaataacacat 4629639  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 16856580 - 16856624
Alignment:
Q  236 tggttgtcaaataagttatcaatttaa-tagttgttcaaataaca 279  Q
    ||||||||||||||||| |||||| || |||||||||||||||||    
T  16856580 tggttgtcaaataagttgtcaattaaattagttgttcaaataaca 16856624  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 1471242 - 1471182
Alignment:
Q  221 ttctttgtaaagatgtggttgtcaaataagttatcaatttaatagttgttcaaataacaca 281  Q
    |||||||||||  | ||||||||||||||||| || ||  |||||||||||||||||||||    
T  1471242 ttctttgtaaatttatggttgtcaaataagttgtctatcaaatagttgttcaaataacaca 1471182  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 5174503 - 5174444
Alignment:
Q  220 tttctttgtaaagatgtggttgtcaaataagttatcaatttaatagttgttcaaataaca 279  Q
    |||||||||||| || |||||||||||||  ||||||| | ||||| |||||||||||||    
T  5174503 tttctttgtaaaaatatggttgtcaaatagattatcaaataaatagatgttcaaataaca 5174444  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 4225845 - 4225934
Alignment:
Q  194 tttggctttcgtgataatacatacgttttctttgtaaagatgtggttgtcaaataagttatcaatttaatagttgttcaaataacacatc 283  Q
    ||||| |||||||  ||||| ||| |||||||| ||||  | ||||||||||||||||| |||  | || | ||||||||||||||||||    
T  4225845 tttggttttcgtgtcaatacctactttttctttataaaactatggttgtcaaataagttgtcacctaaaaaattgttcaaataacacatc 4225934  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 281
Target Start/End: Original strand, 4088533 - 4088623
Alignment:
Q  190 ttgctttggctttcgtgataatacatacgttttctttgtaaagatgtggttgtcaaataagttatcaatttaatagttgttcaaataacaca 281  Q
    ||||||||| ||||||| |||||||||| ||| ||||||||| || || |||||| ||| ||| ||||   ||||| |||||||||||||||    
T  4088533 ttgctttggttttcgtgctaatacatacattt-ctttgtaaaaatatgattgtcacataggttgtcaaaaaaatagatgttcaaataacaca 4088623  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 281
Target Start/End: Original strand, 18695407 - 18695498
Alignment:
Q  190 ttgctttggctttcgtgataatacatacgttttctttgtaaagatgtggttgtcaaataagttatcaatttaatagttgttcaaataacaca 281  Q
    ||||||||  ||||||| ||| || ||| ||| |||||||||  | ||||||||||||||||| || ||  ||| |||||||||||||||||    
T  18695407 ttgctttgattttcgtgctaaaacctacttttcctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacaca 18695498  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 21012665 - 21012742
Alignment:
Q  200 tttcgtgataatacatacgttttctttgtaaagatgtggttgtcaaataagttatcaatttaatagttgttcaaataa 277  Q
    |||||||  ||||| ||| |||||||||||||  |||| || |||||||| || |||||| ||| |||||||||||||    
T  21012665 tttcgtgtcaatacctactttttctttgtaaatttgtgtttatcaaataaattgtcaattaaatggttgttcaaataa 21012742  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 281
Target Start/End: Original strand, 52485562 - 52485652
Alignment:
Q  190 ttgctttggctttcgtgataatacatacgttttctttgtaaagatgtggttgtcaaataagttatcaatttaatagttgttcaaataacaca 281  Q
    ||||||||| |||||||  ||||||||| ||||||||||||| || |||||||| | || ||| ||||   ||||| |||||||||||||||    
T  52485562 ttgctttggttttcgtgccaatacatac-ttttctttgtaaaaatatggttgtccattaggttgtcaaacaaatagatgttcaaataacaca 52485652  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 23155363 - 23155330
Alignment:
Q  248 aagttatcaatttaatagttgttcaaataacaca 281  Q
    |||||||||||| |||||||||||||||||||||    
T  23155363 aagttatcaattaaatagttgttcaaataacaca 23155330  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 45754774 - 45754819
Alignment:
Q  236 tggttgtcaaataagttatcaatttaatagttgttcaaataacaca 281  Q
    |||||||| ||||||||||||||  ||| |||||||||||||||||    
T  45754774 tggttgtctaataagttatcaatcaaatggttgttcaaataacaca 45754819  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 17395048 - 17394965
Alignment:
Q  200 tttcgtgataatacatacgttttctttgtaaagatgtggttgtcaaataagttatcaatttaatagttgttcaaataacacatc 283  Q
    |||||||  ||||| |||||||||||| ||||  | ||||||||||||||||| |||    || ||||||||||||||||||||    
T  17395048 tttcgtgtcaatacctacgttttctttataaaactatggttgtcaaataagttgtcacccaaaaagttgttcaaataacacatc 17394965  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 23352889 - 23352800
Alignment:
Q  190 ttgctttggctttcgtgataatacatacgttttctttgtaaagatgtggttgtcaaataagttatcaatttaatagttgttcaaataacac 280  Q
    ||||||||| |||||||  ||||||||| |||||||||||||  | ||||||||  ||||||| ||||   ||| ||||||||||||||||    
T  23352889 ttgctttggttttcgtgcaaatacatactttttctttgtaaa-ttatggttgtcccataagttgtcaaccaaatggttgttcaaataacac 23352800  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 5032041 - 5032105
Alignment:
Q  219 ttttctttgtaaagatgtggttgtcaaataagttatcaatttaatagttgttcaaataacacatc 283  Q
    |||||||||||||  | ||||||||||||||||| || ||  ||  |||||||||||||||||||    
T  5032041 ttttctttgtaaatttatggttgtcaaataagttgtctatcaaaaggttgttcaaataacacatc 5032105  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 33725471 - 33725553
Alignment:
Q  200 tttcgtgataatacatacgttttctttgtaaagatgtggttgtcaaataagttatcaatttaata--gttgttcaaataacaca 281  Q
    |||||| | ||||||||| |||| ||||||||  | ||||||||| |||||||||| ||| ||||  |||||||||||||||||    
T  33725471 tttcgtaaaaatacatactttttatttgtaaat-tatggttgtcatataagttatcgattaaatatggttgttcaaataacaca 33725553  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 35564407 - 35564467
Alignment:
Q  219 ttttctttgtaaagatgtggttgtcaaataagttatcaatttaatagttgttcaaataacac 280  Q
    |||||||||||||| | ||||||||||||||||| ||| |  | ||||||||||||||||||    
T  35564407 ttttctttgtaaag-tatggttgtcaaataagttgtcactaaattagttgttcaaataacac 35564467  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 157194 - 157238
Alignment:
Q  239 ttgtcaaataagttatcaatttaatagttgttcaaataacacatc 283  Q
    |||||||||||||| |||||  ||| |||||||||||||||||||    
T  157194 ttgtcaaataagttgtcaatcaaattgttgttcaaataacacatc 157238  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 624265 - 624204
Alignment:
Q  219 ttttctttgtaaagatgtggttgtcaaataagttatcaatttaatagttgttcaaataacac 280  Q
    ||||||||||||| || ||||||||||||||||| |||    | ||||||||||||||||||    
T  624265 ttttctttgtaaaaatatggttgtcaaataagttgtcaccaaattagttgttcaaataacac 624204  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 33656888 - 33656952
Alignment:
Q  219 ttttctttgtaaagatgtggttgtcaaataagttatcaatttaatagttgttcaaataacacatc 283  Q
    |||| ||||||||  | |||||||||||||| || |||||  ||| |||||||||||||||||||    
T  33656888 ttttttttgtaaatttatggttgtcaaataaattgtcaatcaaatggttgttcaaataacacatc 33656952  T

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