View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_low_27 (Length: 296)
Name: NF20174_low_27
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 41330369 - 41330640
Alignment:
| Q |
19 |
acaccaacacgtgtcggataccagacacacgatcacttgtcaattcaaactaaattaccaattttccagtgagaaacatagcagaatcatttaattcaat |
118 |
Q |
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| T |
41330369 |
acaccaacacgtgtcagataccagacacacgatcacttgtcaattcaaactaaattagcaattttccagtgataaacataggagaatcatttaattcaat |
41330468 |
T |
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| Q |
119 |
caacatagtttctatattgtgcattccagtgaaaaatgaattaattgaatgtaattacatc----------------gtgtctgacaccgacaaatcaga |
202 |
Q |
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| T |
41330469 |
caacatagtttctatattgtgcattccagtgaaaaatgaattaattgaatgtaattacatcgtgtcagagagtgtaagtgtctgacaccgacaaatcaga |
41330568 |
T |
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| Q |
203 |
cacgcctttcatcagaagtatgtatcggtgttccagagattcaactatcaacaa-tcatagaccaaaaagct |
273 |
Q |
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| T |
41330569 |
cacgcctttcatcagaagtatgtatcggtgttccagagattcaactatcaacaattcatagaccaaaaagct |
41330640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 41330128 - 41330189
Alignment:
| Q |
82 |
ttccagtgagaaacatagcagaatcatttaattcaatcaacatagtttctatattgtgcatt |
143 |
Q |
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| T |
41330128 |
ttccattgagaaacatagtagaatcattcaattcaattaacatagtttctaaattctgcatt |
41330189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 178
Target Start/End: Original strand, 1283270 - 1283298
Alignment:
| Q |
150 |
aaaaatgaattaattgaatgtaattacat |
178 |
Q |
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| T |
1283270 |
aaaaatgaattaattgaatgtaattacat |
1283298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 8281657 - 8281687
Alignment:
| Q |
148 |
tgaaaaatgaattaattgaatgtaattacat |
178 |
Q |
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| T |
8281657 |
tgaaaaatgaattaattgaatgtaattacat |
8281687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 16274378 - 16274339
Alignment:
| Q |
152 |
aaatgaattaattgaatgtaattacatcgtgtctgacaccg |
192 |
Q |
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| T |
16274378 |
aaatgaattaattgaatgtaatcacat-gtgtctgacaccg |
16274339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 178
Target Start/End: Complemental strand, 31498271 - 31498243
Alignment:
| Q |
150 |
aaaaatgaattaattgaatgtaattacat |
178 |
Q |
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| T |
31498271 |
aaaaatgaattaattgaatgtaattacat |
31498243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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