View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20174_low_29 (Length: 294)

Name: NF20174_low_29
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20174_low_29
NF20174_low_29
[»] chr8 (1 HSPs)
chr8 (18-279)||(41965929-41966191)
[»] scaffold0667 (1 HSPs)
scaffold0667 (24-279)||(5139-5395)
[»] chr2 (24 HSPs)
chr2 (55-279)||(8572745-8572973)
chr2 (19-165)||(9316816-9316966)
chr2 (25-165)||(10372676-10372817)
chr2 (31-279)||(10336497-10336740)
chr2 (25-141)||(10348622-10348738)
chr2 (64-168)||(14551111-14551215)
chr2 (19-187)||(9060306-9060478)
chr2 (18-168)||(9292719-9292870)
chr2 (31-161)||(9321789-9321920)
chr2 (31-141)||(9329418-9329528)
chr2 (22-139)||(9283385-9283502)
chr2 (31-149)||(9275333-9275452)
chr2 (50-172)||(10353932-10354055)
chr2 (22-140)||(12018125-12018243)
chr2 (52-141)||(9357935-9358024)
chr2 (57-141)||(7114891-7114975)
chr2 (56-140)||(12011838-12011922)
chr2 (62-140)||(9365415-9365493)
chr2 (64-140)||(7612716-7612792)
chr2 (77-140)||(8577689-8577752)
chr2 (62-140)||(8578776-8578854)
chr2 (199-279)||(9357842-9357922)
chr2 (18-141)||(12005372-12005495)
chr2 (64-133)||(17565367-17565436)
[»] chr4 (2 HSPs)
chr4 (31-172)||(26575666-26575808)
chr4 (96-149)||(561980-562034)
[»] chr1 (4 HSPs)
chr1 (64-224)||(29442612-29442770)
chr1 (64-242)||(29423934-29424110)
chr1 (64-218)||(29452604-29452756)
chr1 (64-218)||(29467078-29467230)
[»] chr3 (1 HSPs)
chr3 (19-167)||(37463314-37463463)
[»] chr5 (1 HSPs)
chr5 (64-139)||(36225571-36225646)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 41965929 - 41966191
Alignment:
Q  18 agaaatactcgctgaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaac 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41965929 agaaatactcgctgaaatcttctccctattaccggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaac 41966028  T
Q  118 ttcatcaaccttcacctca-aaaatccctcaatcgatccttaatccttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaacca 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966029 ttcatcaaccttcacctcagaaaatccctcaatcgatccttaatccttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaacca 41966128  T
Q  217 ccgccgttccactcaatcatcctttcttgcgtcacagcaccaacatcactcttctgggttcat 279  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41966129 ccgccgttccactcaaccatcctttcttgcgtcacagcaccaacatcactcttctgggttcat 41966191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 279
Target Start/End: Complemental strand, 5395 - 5139
Alignment:
Q  24 actcgctgaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatc 123  Q
    |||||| |||||||||||||  ||| ||||||||||| ||||||||||||||||||| || |||||||||  |||| ||||| |||| ||||||||||||    
T  5395 actcgcagaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatc 5296  T
Q  124 aaccttcacctcaaaaa-tccctcaatcgatccttaatccttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccg 222  Q
    |||||||||| |||||| ||||||||| ||||||| |||||||||||||   |  || |||||||  |||| || |||||||| ||||| ||||||||||    
T  5295 aaccttcaccgcaaaaattccctcaatagatccttcatccttcgactcagatccaatatctaccaaatcgaagatgatttctcaaacctcaccaccgccg 5196  T
Q  223 ttccactcaatcatcctttcttgcgtcacagcaccaacatcactcttctgggttcat 279  Q
    |||||||||| || ||||||  |||| |||||||||||||  ||||| | |||||||    
T  5195 ttccactcaaccaccctttcacgcgtaacagcaccaacattgctcttatcggttcat 5139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 55 - 279
Target Start/End: Original strand, 8572745 - 8572973
Alignment:
Q  55 aaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa-tccctcaatcgat 153  Q
    |||||| ||||||||||||||||||| || |||||||||  |||  ||||| ||||||||||||||| |||||||||||||||||| ||||||||||| |    
T  8572745 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgtt 8572844  T
Q  154 ccttaatccttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccg---ttccactcaatcatcctttcttgcgtca 250  Q
    |||||||| |||||| ||||   ||| |||||||  ||||||| ||||||||| | |||||||||||||   |||||||||| ||||||||||   || |    
T  8572845 ccttaatcattcgacgcaactacgatatctaccaaatcgatgatgatttctctgatctaaccaccgccgagtttccactcaaccatcctttctccggtaa 8572944  T
Q  251 cagcaccaacatcactcttctgggttcat 279  Q
    ||||||||| || |||||| | |||||||    
T  8572945 cagcaccaaaattactcttatcggttcat 8572973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 9316966 - 9316816
Alignment:
Q  19 gaaatactcgctgaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaact 118  Q
    ||||||||||| |||||||||||||  ||| | ||||||||| ||||||||||||||||||| || |||||||||  ||| |||||  |||| |||||||    
T  9316966 gaaatactcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatagattctcacaact 9316867  T
Q  119 tcatcaaccttcacctcaaaaa----tccctcaatcgatccttaatccttc 165  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||    
T  9316866 tcatcaaccttcacctcaaaaataattccctcaatcgatccttaatccttc 9316816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 10372817 - 10372676
Alignment:
Q  25 ctcgctgaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatca 124  Q
    ||||| ||| |||||||||  ||| ||||||||||| ||||||||||||||||||| || |||||| ||  ||| |||||| |||||||||| |||||||    
T  10372817 ctcgccgaagtcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatca 10372718  T
Q  125 accttcacct-caaaaatccctcaatcgatccttaatccttc 165  Q
    |||||||||| ||||| |||||||||||||||||||||||||    
T  10372717 accttcacctccaaaattccctcaatcgatccttaatccttc 10372676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 279
Target Start/End: Complemental strand, 10336740 - 10336497
Alignment:
Q  31 gaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttc 130  Q
    |||||||||||||  ||| ||||||||||| |||||||||||||||||||||| |||||||||  |||||||||| |||| ||||| |||||||||||||    
T  10336740 gaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttc 10336641  T
Q  131 acc-tcaaaaatccctcaatcgatccttaatccttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccact 229  Q
    ||| |||||| |||||||||     | | ||||| || | ||| || || ||||||||  ||       ||||| |||||||||||||||| ||||||||    
T  10336640 accttcaaaattccctcaattttaacctcatcctccgtcgcaaaaccgacctctaccacctc------catttccctaacctaaccaccgctgttccact 10336547  T
Q  230 caatcatcctttcttgcgtcacagcaccaacatcactcttctgggttcat 279  Q
    ||| ||||||||| | |  ||||||| ||||||| ||||||| |||||||    
T  10336546 caaccatcctttcatccaccacagcaacaacatcgctcttcttggttcat 10336497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 10348738 - 10348622
Alignment:
Q  25 ctcgctgaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatca 124  Q
    ||||| |||||||||||||  ||| ||||||||||| |||||||||||||||||||||| |||||||||  |||||||||| |||||| ||| |||||||    
T  10348738 ctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatca 10348639  T
Q  125 accttcacctcaaaaat 141  Q
    |||||||||| ||||||    
T  10348638 accttcacctaaaaaat 10348622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 14551215 - 14551111
Alignment:
Q  64 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaatccctcaatcgatccttaatcct 163  Q
    |||| |||||||||||| || |||||||||| |||| ||||| ||||||||||||||||||| |||||||| |||| ||||||||| | |||||||||||    
T  14551215 ctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctaaaaattccctcaattgttccttaatcct 14551116  T
Q  164 tcgac 168  Q
    |||||    
T  14551115 tcgac 14551111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 9060306 - 9060478
Alignment:
Q  19 gaaatactcgctgaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaact 118  Q
    |||||||| || |||||||||||||  ||| ||||  ||||| ||||||||||||||||||| || |||||||||  |||||||||| |||| |||||||    
T  9060306 gaaatacttgccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgattctcacaact 9060405  T
Q  119 tcatcaaccttcacctcaaaaat----ccctcaatcgatccttaatccttcgactcaacactgatctctacca 187  Q
    |||  |||||| |||||||||||    ||||||||||||   |||||||||||| |||  | |||||||||||    
T  9060406 tcactaacctttacctcaaaaataatcccctcaatcgatttataatccttcgacacaaatccgatctctacca 9060478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 9292870 - 9292719
Alignment:
Q  18 agaaatactcgctgaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaac 117  Q
    ||||||| |||| |||||||||||||   || | ||||||||| ||||| ||||||||||||  || |||||||||  |||| ||||| |||| |||| |    
T  9292870 agaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagc 9292771  T
Q  118 ttcatcaaccttcacctcaaaaa-tccctcaatcgatccttaatccttcgac 168  Q
    ||||  ||||||||||||||||| |||||||| |||||||||||||||||||    
T  9292770 ttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcgac 9292719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 9321920 - 9321789
Alignment:
Q  31 gaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttc 130  Q
    |||||| ||||||  ||| ||||||||||| |||||| |||||||||||| || |||||||||  |||| ||||| |||| ||| |||||||||||||||    
T  9321920 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttc 9321821  T
Q  131 acctcaaaaa-tccctcaatcgatccttaatc 161  Q
    | |||||||| ||||||| |||||||||||||    
T  9321820 atctcaaaaattccctcagtcgatccttaatc 9321789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 9329528 - 9329418
Alignment:
Q  31 gaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttc 130  Q
    |||||| ||||||  ||| ||||||||||| ||||||||||||| ||||| || |||||||||  |||| ||||| |||||||||||||||  |||||||    
T  9329528 gaaatcctctcccgcttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttc 9329429  T
Q  131 acctcaaaaat 141  Q
    |||||||||||    
T  9329428 acctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 9283385 - 9283502
Alignment:
Q  22 atactcgctgaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttca 121  Q
    ||||| || ||||||||||||   ||| | || |||||| | ||||||||||||||||| || ||||||||||||||| ||||  |||| ||||| ||||    
T  9283385 atacttgccgaaatcttctcctgcttaccagttaaatcactactccgattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattca 9283484  T
Q  122 tcaaccttcacctcaaaa 139  Q
    ||||||||||||||||||    
T  9283485 tcaaccttcacctcaaaa 9283502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 9275452 - 9275333
Alignment:
Q  31 gaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttc 130  Q
    |||||||||||||  ||| | ||| ||||| ||||| |||||||||||| ||| |||||||||  ||| || ||  ||||||||||||||||||||||||    
T  9275452 gaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttc 9275353  T
Q  131 acctcaaaaa-tccctcaat 149  Q
    | |||||||| |||||||||    
T  9275352 atctcaaaaattccctcaat 9275333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 172
Target Start/End: Complemental strand, 10354055 - 10353932
Alignment:
Q  50 cggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctca-aaaatccctcaa 148  Q
    |||||| |||| ||||| ||||||||||||| || |||||| ||  |||| ||||| ||||| |||| ||||||||||||||||||| ||| |||| |||    
T  10354055 cggtaatatcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaa 10353956  T
Q  149 tcgatccttaatccttcgactcaa 172  Q
    || ||||||||| |||||| ||||    
T  10353955 tcaatccttaattcttcgattcaa 10353932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 12018125 - 12018243
Alignment:
Q  22 atactcgctgaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttca 121  Q
    |||||||| |||||||||||||  ||| | ||||||||| |||| |||||||| ||||| || |||||||||  |||| ||||| |||| ||||||||||    
T  12018125 atactcgccgaaatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttca 12018224  T
Q  122 tcaaccttcacctcaaaaa 140  Q
     ||| ||||| ||||||||    
T  12018225 ccaatcttcaactcaaaaa 12018243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 9358024 - 9357935
Alignment:
Q  52 gtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat 141  Q
    ||||||||| ||||||| ||  ||||||| || |||||||||  |||||||||| |||| ||||||||||| ||||||||||||||||||    
T  9358024 gtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 7114891 - 7114975
Alignment:
Q  57 atcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat 141  Q
    |||| |||| |||||||||||||| || |||||||||  |||||||||| |||||||||| |||||||||||||| || ||||||    
T  7114891 atcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaat 7114975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 12011838 - 12011922
Alignment:
Q  56 aatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa 140  Q
    ||||| ||||||||||||| ||||| || |||||||||  |||| ||||| |||| |||||||||| ||| ||||||||||||||    
T  12011838 aatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcacctcaaaaa 12011922  T

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Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 9365493 - 9365415
Alignment:
Q  62 ttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa 140  Q
    |||||||||||||||||||||| |||||||||  |||| ||||| |||| |||| ||||| |||||| || ||||||||    
T  9365493 ttctccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaacctccatctcaaaaa 9365415  T

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Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 7612792 - 7612716
Alignment:
Q  64 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa 140  Q
    ||||||||||||||||  || ||||| |||  |||||||||  |||||||||||||||  |||||||||||||||||    
T  7612792 ctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcacctcaaaaa 7612716  T

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Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 8577689 - 8577752
Alignment:
Q  77 caacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa 140  Q
    |||| ||||||||| || ||||||||||  |||||||||||||||||||| || ||||||||||    
T  8577689 caacttcgaaatcaatttgatccttaattgattcccacaacttcatcaacttttacctcaaaaa 8577752  T

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Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 8578776 - 8578854
Alignment:
Q  62 ttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa 140  Q
    ||||||||||||||||||  || ||||||||||||||||| ||  ||||||||| ||||| ||| | | ||||||||||    
T  8578776 ttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattacctcaaaaa 8578854  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 279
Target Start/End: Complemental strand, 9357922 - 9357842
Alignment:
Q  199 atttctctaacctaaccaccgccgttccactcaatcatcctttcttgcgtcacagcaccaacatcactcttctgggttcat 279  Q
    ||||||| ||| | |||||||||||||||||||| || ||||||  |||| |||||||||||||  ||||| | |||||||    
T  9357922 atttctcaaacttcaccaccgccgttccactcaaccaccctttcacgcgtaacagcaccaacatttctcttatcggttcat 9357842  T

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Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 12005372 - 12005495
Alignment:
Q  18 agaaatactcgctgaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaac 117  Q
    |||||||||| | |||||||||||||  ||| |   | ||||| ||||||||||||| ||||| ||  |||| |||  |||| ||||| |||| ||||||    
T  12005372 agaaatactcaccgaaatcttctcccgcttacctccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaac 12005471  T
Q  118 ttcatcaaccttcacctcaaaaat 141  Q
    |||| ||||||||| || ||||||    
T  12005472 ttcaccaaccttcatctaaaaaat 12005495  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 17565367 - 17565436
Alignment:
Q  64 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacc 133  Q
    |||||| |||||||||| ||||||||||||  ||  |||||  ||||||| ||||||| |||||||||||    
T  17565367 ctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttcacc 17565436  T

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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 26575808 - 26575666
Alignment:
Q  31 gaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttc 130  Q
    |||||||||||||  ||| |||||| |||| ||||||||||||||||||| || |||||||||  || ||||||| ||||| |||| |||||||||||||    
T  26575808 gaaatcttctcccgtttaccggtaatatcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttc 26575709  T
Q  131 acctca-aaaatccctcaatcgatccttaatccttcgactcaa 172  Q
    |||||| ||| |||| |||||||||||||||||||||| ||||    
T  26575708 acctcagaaattcccccaatcgatccttaatccttcgattcaa 26575666  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 562034 - 561980
Alignment:
Q  96 atccttaatcaattcccacaacttcatcaaccttcacctcaaaaa-tccctcaat 149  Q
    |||| ||||| |||||||||||||||  ||||||||||||||||| |||||||||    
T  562034 atccataatcgattcccacaacttcactaaccttcacctcaaaaactccctcaat 561980  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 29442612 - 29442770
Alignment:
Q  64 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatcc 162  Q
    ||||||||||| ||||| ||||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| ||||| | ||||||||| ||||||||||    
T  29442612 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatcc 29442711  T
Q  163 ttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgtt 224  Q
    |||||| ||||  |||| |||||||  ||   || |||||||||||||||||||||| ||||    
T  29442712 ttcgacacaactttgatttctaccaaatc---gaagatttctctaacctaaccaccggcgtt 29442770  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 242
Target Start/End: Complemental strand, 29424110 - 29423934
Alignment:
Q  64 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatcc 162  Q
    ||||||||||| |||||||| |||||||||| |||  ||||| ||||||||| ||||||||| |||||||| || || ||| ||||||| ||||||||||    
T  29424110 ctccgattccgttcaacctcaaaatcacttcaatctctaatcgattcccacagcttcatcaagcttcacctccataattccttcaatcgttccttaatcc 29424011  T
Q  163 ttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactcaatcatcctttc 242  Q
    |||||| |||| ||||| |||||||  ||    | ||||||||||||||||| |||||||||  |||||||| |||||||    
T  29424010 ttcgacacaactctgatttctaccaaatc---aacgatttctctaacctaactaccgccgttaaactcaatcctcctttc 29423934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 29452604 - 29452756
Alignment:
Q  64 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatcc 162  Q
    ||||||||||| |||||||| |||||||||| |||| ||||| |||| |||||||||||||| |||||||| ||||| ||||||||||| ||||||||||    
T  29452604 ctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaatcc 29452703  T
Q  163 ttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccacc 218  Q
    |||||| |||| ||| | |||||||  ||    | |||||||||||||||||||||    
T  29452704 ttcgacacaactctgttttctaccaaatc---aacgatttctctaacctaaccacc 29452756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 29467078 - 29467230
Alignment:
Q  64 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatcc 162  Q
    ||||||||||| |||||||| |||||||||| |||| ||||| ||||||||||||||||||| |||||||| | ||| ||||||||||| | ||||||||    
T  29467078 ctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccgaaattccctcaatcgtttcttaatcc 29467177  T
Q  163 ttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccacc 218  Q
    |||||| |||| | ||| |||||||  ||    | |||||||||||||||||||||    
T  29467178 ttcgacacaactccgatttctaccaaatc---aacgatttctctaacctaaccacc 29467230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 37463463 - 37463314
Alignment:
Q  19 gaaatactcgctgaaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaact 118  Q
    ||||||||||| |||||| ||||||  ||| | ||| ||||| ||||||||||||||||||| || |||||||||  ||| |||||| |||| |||||||    
T  37463463 gaaatactcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaact 37463364  T
Q  119 tcatcaaccttcacctcaaaaat-ccctcaatcgatccttaatccttcga 167  Q
    ||||||||||||| ||||||||| ||||||||| |||| ||||| |||||    
T  37463363 tcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatcattcga 37463314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 36225646 - 36225571
Alignment:
Q  64 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaa 139  Q
    ||||||||||||||||| || |||||||||  ||| |||||| |||| ||||||||||  || |||||||||||||    
T  36225646 ctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttcacctcaaaa 36225571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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